Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1400 ATGGATCTCTTCCCTTTCCCACCAGAATCGAAGAAGGAAAACTCTAAGTCAAAGCAGTTAGTCCAAAGGAAAAAACCACCACCATCTCCTCCTCCTTTTTCTGCTGCTGCTTCATCATGGGAGCAAATCAAGATTTTTCTCACCTGCAAACAGATCGAAAAGACGCTAGTTCACAATCCAACAAAACGCAGAGTCAGTTCCATCTCTAAGCTGGGCTCTTCTTGCATCTCTAATATTTGTAGCGTCAAAGACGGGGTGATCCCTGCAGGCAACGCCCGGGTTGTACACAGAGCTGATAATTCACCTGAAACCACCTCAACGGGTCACCAGACCGAGTTACCGAGTCGGCTCAAAGCCATTAACGGTTCGTCGTCCTCGTCCAGAACTCGGTCTACCTCCCTGTCGGAGAAATCCAAGGGCGGTGCAGGTACTAGTTCTTACACGTCGTCTTCTACTAGAGGAATGCAATTAAGAAAGCTTTCTGGTTGTTATGAGTGTCACTACATCGTGGACCCTAGCAGGTCTTCAATTTCAAGAACTACCATATCCACGTGTCCTCAATGCAGAGAAGTATTCCCGAAGATTGAAAATCTTGAGCTTCACCAAGCAATCCGACATGCCGTTTCGGAGCTGGGCCCTGAAGATTCTGGACGCAACATAGTGGAGATAATCTTCAAATCAAGCTGGCATAAGAAAGACAATCCGATCTGTACCATCGAACGGATATTAAAAGTCCACAACACCCAGAGAACGATCCAACGGTTCGAGGACTGCCGGGAAACAGTCAAAGCGCGCGCAGTACTTAACAGCACGAGAAGAAACGCTAGATGTGCAGCGGACGGCAACGAGCTGTTGAGGTTTTACTGCAGCGGCTTATCGTGCACGCTCGGAGCACGTGGATACTCCAGCTTGTGTGGGTCCATACCCGGCTGTGGAGTGTGCACGATAATCAGATACGGGTTTCAAGGGAAGGAGAAGGAGAAGGACCGCGGTGATTGCATAAAGCTGGGGGTGAGGACCACGGCCAGTAGTGGTAGAGCCCACGACTCATTGTGCGGTGAAGATATTGGACGTAGGGCCATGCTGGTGTGTCGCGTCATTGCTGGAAGAGTGAGAAATGTAGAGGATGATGCTCCGCCGGATCAGGATAGCTTGTCGGCTGGCTCGTACGATTCTGTAGCCGCATTCGCTGGTATCTACTCGAATCTCGAGGAGTTGGTTGTCTATAATCCAAGGGCCATCCTTCCGTGTTTCGTTGTTATTTACAAAGCCCTTGAGTCGAGATACTAA 1290 49.53 MDLFPFPPESKKENSKSKQLVQRKKPPPSPPPFSAAASSWEQIKIFLTCKQIEKTLVHNPTKRRVSSISKLGSSCISNICSVKDGVIPAGNARVVHRADNSPETTSTGHQTELPSRLKAINGSSSSSRTRSTSLSEKSKGGAGTSSYTSSSTRGMQLRKLSGCYECHYIVDPSRSSISRTTISTCPQCREVFPKIENLELHQAIRHAVSELGPEDSGRNIVEIIFKSSWHKKDNPICTIERILKVHNTQRTIQRFEDCRETVKARAVLNSTRRNARCAADGNELLRFYCSGLSCTLGARGYSSLCGSIPGCGVCTIIRYGFQGKEKEKDRGDCIKLGVRTTASSGRAHDSLCGEDIGRRAMLVCRVIAGRVRNVEDDAPPDQDSLSAGSYDSVAAFAGIYSNLEELVVYNPRAILPCFVVIYKALESRY 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9660835 9662788 + Conep17aG0143600.1 Cone17ag1400 456877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1400 429 ProSitePatterns Zinc finger C2H2 type domain signature. 185 206 IPR013087 -
Cone17ag1400 429 Gene3D - 207 424 - -
Cone17ag1400 429 MobiDBLite consensus disorder prediction 98 153 - -
Cone17ag1400 429 MobiDBLite consensus disorder prediction 1 20 - -
Cone17ag1400 429 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 38 423 - -
Cone17ag1400 429 MobiDBLite consensus disorder prediction 97 153 - -
Cone17ag1400 429 SUPERFAMILY ADP-ribosylation 208 423 - -
Cone17ag1400 429 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1400 Cone-Chr17:9660835 Cone4ag1379 Cone-Chr4:11178786 4.19E-87 dispersed
Cone17ag1400 Cone-Chr17:9660835 Cone4ag1968 Cone-Chr4:13835607 1.62E-171 wgd
Cone17ag1400 Cone-Chr17:9660835 Cone7ag1881 Cone-Chr7:12127236 1.04E-167 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45122 PF03372 Exo_endo_phos 9.30E-16 CL0530 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1400 - - - 0.0