Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1403 ATGTCTCCGATTTCAGTGGATTTCTCTCAAAACGGAAGTCTAAGAAGGATCGATTCCGGGGAGAGATCGTTGTTCGAACTGGATGAGTTCGACTTTATGAAGTTATCTGAAAGACCGAGACAGTTAACCTTAGAGAGAAACAGATCATTTGATGAAAGGTCTACCTTTAGTGACATGTCAATGAGGTCTGGTTCCAATACGCCCAGATCAAACAGTCACGTTGAGCCCCACCCCATGGTAGCTGATGCATGGGATTCCCTCAGACGGTCTCTCATCAACTTCCGAGGTCAACCGGTAGGAACAATCGCCGCCCTAGACCACTCTGCAGAAGAACTCAACTACGATCAGGTATTTGTTCGGGATTTTGTTCCGAGCGCTTTGGCCTTTTTGATGAACGGAGAAACCGCGATAGTTCGGAATTTCTTATTGAAAACTTTGAGGTTGCAATCATGGGAAAAGAAGGTGGATAAGTTCGAGCTAGGAGAAGGGGTGATGCCGGCAAGTTTCAAAGTGCTACACGATCCGGTAAGGAATTTGGAGACTCTAGTTGTAGATTTTGGAGAGAGTGCAATAGGAAGAGTTGCCCCTGTTGATTCTGGATTCTGGTGGATCATATTACTACGTGCTTACACAAAATCAACAGGCGATTCTTCATTAGCAGACATGCCTGAGTTTCAAAAGGGGATGCGCCTTATTCTCTCCTTGTGTCTTTCTGAAGGCTTTGACACTTTCCCTACCCTCCTTTGTACCGACGGTTGCTGCATGATCGACCGTAGAATGGGGGTATATGGGTACCCAATTGAGATACAAGCACTGTTCTTTATGGCGTTAAGGTGTGCATTGTATTTACTCAAGCACGACGAAGATGGAAAGGAGTTTATGGACCGGATAGCTAACCGCCTCCATGCATTAAGCTATCATATCAGGAGCTATTTCTGGCTGGACATAAAGCAACTAAACGACATATACCGCTACAAGACAGAGGAATACTCTCACACTGCTGTTAACAAGTTCAACGTGATCCCAGATTCTCTACCGGATTGGGTTTTCGATTTCATGCCAAGTCGTGGCGGTTACTTCATCGGAAACGTGAGCCCGGCGAAAATGGATTTCCGTTGGTTCTGTTTGGGTAATTGCGTTGCTATCTGTTCGTCATTAGCGACGCCTGAACAATCCACCGCCATAATGGACCTTATAGAGTCGCGTTGGCAAGAATTGGTCGGAGAAATGCCCTTGAAAATCTGTTATCCCGCGTTAGAATATAAAGAATGGCAGATTGTTACCGGTTGTGACCCGAAAAACACCAGGTGGAGCTACCACAATGGTGGATCCTGGCCAGTGCTTCTGTGGCTGTTGACGGCGGCGTGCATAAAGACAGGGCGGCCGCAATTAGCGAGGCGGGCGATTGAGGTGGCGGAGAGCCGGTTGTCGAAGGATCATTGGCCGGAGTATTACGATGGGAAGCTCGGAAAGTACGTCGGTAAACAGGCTCGTAGGCCACAGACGTGGTCGGCTGCAGGTTATTTAGTGGCTAAGATGATGATTGAAGATCCTTCTCATATTGGTATGATCACGCTTGAAGATGAAAAACAGAGAAATTCTTTTATCCGAAGATGCGCTTCATGGACCTGCTAA 1635 46.91 MSPISVDFSQNGSLRRIDSGERSLFELDEFDFMKLSERPRQLTLERNRSFDERSTFSDMSMRSGSNTPRSNSHVEPHPMVADAWDSLRRSLINFRGQPVGTIAALDHSAEELNYDQVFVRDFVPSALAFLMNGETAIVRNFLLKTLRLQSWEKKVDKFELGEGVMPASFKVLHDPVRNLETLVVDFGESAIGRVAPVDSGFWWIILLRAYTKSTGDSSLADMPEFQKGMRLILSLCLSEGFDTFPTLLCTDGCCMIDRRMGVYGYPIEIQALFFMALRCALYLLKHDEDGKEFMDRIANRLHALSYHIRSYFWLDIKQLNDIYRYKTEEYSHTAVNKFNVIPDSLPDWVFDFMPSRGGYFIGNVSPAKMDFRWFCLGNCVAICSSLATPEQSTAIMDLIESRWQELVGEMPLKICYPALEYKEWQIVTGCDPKNTRWSYHNGGSWPVLLWLLTAACIKTGRPQLARRAIEVAESRLSKDHWPEYYDGKLGKYVGKQARRPQTWSAAGYLVAKMMIEDPSHIGMITLEDEKQRNSFIRRCASWTC 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9666695 9668566 - Conep17aG0143900.1 Cone17ag1403 456880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1403 544 SUPERFAMILY Six-hairpin glycosidases 77 523 IPR008928 GO:0005975(InterPro)
Cone17ag1403 544 FunFam probable alkaline/neutral invertase B 108 511 - -
Cone17ag1403 544 Gene3D - 103 514 IPR012341 GO:0005975(InterPro)
Cone17ag1403 544 MobiDBLite consensus disorder prediction 56 73 - -
Cone17ag1403 544 Pfam Alkaline and neutral invertase 83 518 IPR024746 GO:0033926(InterPro)
Cone17ag1403 544 PANTHER - 47 533 IPR024746 GO:0004575(PANTHER)|GO:0005987(PANTHER)|GO:0033926(InterPro)
Cone17ag1403 544 MobiDBLite consensus disorder prediction 53 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1403 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1403 Cone-Chr17:9666695 Cone20ag0699 Cone-Chr20:4388681 3.47e-319 dispersed
Cone12ag1209 Cone-Chr12:9449436 Cone17ag1403 Cone-Chr17:9666695 2.43e-317 wgd
Cone17ag1403 Cone-Chr17:9666695 Cone20ag0079 Cone-Chr20:372500 8.99E-228 wgd
Cone17ag1403 Cone-Chr17:9666695 Cone8ag1261 Cone-Chr8:10477023 1.65e-317 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1403 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001478 3 3 4 3 4 1 3 1 1 1 1 1 3 2 2 3 1 6 3 2 2 2 2 2 2 2 2 4 2 5 73