Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1406 ATGCCTTCAGACGAATCGAAGCCGGCGAGGAAAGTTAAGGTCGAGAAAGAAGAAGATGCCGAGTATGGAAGGAGCCTTAGTTCTGTTCTCCAGGATCAGAAGAAGAAATCCGTCAATGCAGGTTCGAACTCTCGCTCTTTGAAGGTGAAGGAAGAGAATCGGGACGATAATAAGTCTGTGGAAAAGATTCAGAAGACGAATCGTGGCTCTATCGACTCCAAGGGACCTACAGTTAAGAAAGAAGAGGCTTTTGATTTTGACGATGAGGAAGATGATAAGAAGCCTGTCATTAAAAAGAGCTCCGCAGTTAAGGCAGCTAACCAGGAATCGACGAAGAAGAAGAAGATGAAGGAGGAGGTGAAGGAGATGAAAGCGGCTGTAGTGGATAAGGAAAACAAAAAGAGAGAGAGGAAGGAGAAGAAAGAGTATGATTTACCGGGTCAGAAGCGGGACCCGCCCGAGGAGAGAGACCCGCTGAGGATATTCTATGAAACCCTTTATAAGCAAGTTCCTCATAGCGAAATGGCACAATTCTGGATGATGGAATCTGGGTTATTATCTAAAGAAGAGGCAAAGAAAGTATATGACAAGAAGCAGAAGAAAGCGCAGCAGCAAAAGCTTTCTTCCCCAATGAAGAAGGCTGCAAATGGTGTGAAACCTACTCCGGTTAAGAAAGAGACAGAATCTCCGGCTTCTCTGAAACAGAAGAAGAAACCAGAGTCCAAGGTTGTCCAAAAGCAATCTAATAAGAAGCGCAAGCACTCAAGCTCCGAGGAAGAATCCGATGATGACTTTGAAGTGACCACAATTAGTGCCAGAAAGAAACAGAAAGCAGCTTGA 840 44.76 MPSDESKPARKVKVEKEEDAEYGRSLSSVLQDQKKKSVNAGSNSRSLKVKEENRDDNKSVEKIQKTNRGSIDSKGPTVKKEEAFDFDDEEDDKKPVIKKSSAVKAANQESTKKKKMKEEVKEMKAAVVDKENKKRERKEKKEYDLPGQKRDPPEERDPLRIFYETLYKQVPHSEMAQFWMMESGLLSKEEAKKVYDKKQKKAQQQKLSSPMKKAANGVKPTPVKKETESPASLKQKKKPESKVVQKQSNKKRKHSSSEEESDDDFEVTTISARKKQKAA 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9673080 9674873 + Conep17aG0144200.1 Cone17ag1406 456883

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1406 279 MobiDBLite consensus disorder prediction 108 159 - -
Cone17ag1406 279 MobiDBLite consensus disorder prediction 1 159 - -
Cone17ag1406 279 MobiDBLite consensus disorder prediction 193 279 - -
Cone17ag1406 279 MobiDBLite consensus disorder prediction 47 83 - -
Cone17ag1406 279 Coils Coil 106 140 - -
Cone17ag1406 279 MobiDBLite consensus disorder prediction 229 271 - -
Cone17ag1406 279 MobiDBLite consensus disorder prediction 1 23 - -
Cone17ag1406 279 Coils Coil 188 208 - -
Cone17ag1406 279 PANTHER OS05G0596200 PROTEIN 16 277 - -
Cone17ag1406 279 MobiDBLite consensus disorder prediction 26 46 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1406 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1122 Cone-Chr17:8306915 Cone17ag1406 Cone-Chr17:9673080 2.68E-23 dispersed
Cone17ag1406 Cone-Chr17:9673080 Cone20ag0600 Cone-Chr20:3510165 9.41E-12 dispersed
Cone17ag1406 Cone-Chr17:9673080 Cone20ag0077 Cone-Chr20:366264 1.76E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1113 Blo01g01598 . Bda01g00484 . Bpe02g00348 . . . . . Cma01g01975 . . . . . . . . . . . . . . . . . . . . . . Cone17ag1406 Cone20ag0077 . Csa03g04284 Chy04g00413 . . . . . . . . . Sed01g2479 Cmo01g02033 . . . . . . Cpe02g00068 Bhi09g02083 Tan01g5022 Cmetu04g1253 . Hepe01g1611 Mch11g0113 . Cla05g01866 Cam05g1995 Cec05g2007 Cco05g2065 Clacu05g1987 Cmu05g1868 Cre05g1992 . . . Cme04g00464
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012373 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 29