Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag1410 | ATGCTGTTTCTGCTGGCTTCAGTAGTGTTCTCAACCACCTTCACGATATCGAACAAATGCGAACACACGGTGTGGCCTGGAATTTTGTCAAACGCAGGTGTACCTACACTTTCCCCCACTGGATTCGCTCTGCAAAGCGGCGAGTCGAAGATGATCTCCGCGCCAACTTCTTGGGGAGGTCGTTTTTGGGGAAGAACCAATTGCTCTCAAGACTCCACCGGAAAGTTCACGTGCGTCACAGGTGATTGTGGCTCCGACAAACTCGAATGCGCCGGTAGTGGGGCCACGCCGCCAGCTACTCTAGCCGAGTTTACTCTAGACGGTTCCGGTGGCCTTGATTTCTTCGACGTTAGTTTAGTCGACGGTTATAACCTCCCTATGCTGGTGGTTCCACAGGGCGGAACTGGACAGAACTGTACGAGTACCGGTTGCGTGGTGAATCTGAACGGTGCGTGTCCGACTGAGCTGAAGGTGAGGAGCGTGGACGGTGAAGAAGCGGTGGCTTGCAAGAGCGCATGCGAGGCTTTTAATGAACCAATGTACTGCTGCAGCGGCGCGTATGCTACGCCTGACACTTGCAAGCCGTCTACCTACTCTCAGCTGTTTAAGAACGCATGCCCACGCGCTTACAGTTACGCTTACGATGATAAGACCAGCACTTTCACTTGTGCTTCTGCTGATTATGTTATCACTTTCTGCCCCGCCCCTAACACCAGGTAA | 720 | 53.06 | MLFLLASVVFSTTFTISNKCEHTVWPGILSNAGVPTLSPTGFALQSGESKMISAPTSWGGRFWGRTNCSQDSTGKFTCVTGDCGSDKLECAGSGATPPATLAEFTLDGSGGLDFFDVSLVDGYNLPMLVVPQGGTGQNCTSTGCVVNLNGACPTELKVRSVDGEEAVACKSACEAFNEPMYCCSGAYATPDTCKPSTYSQLFKNACPRAYSYAYDDKTSTFTCASADYVITFCPAPNTR | 239 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 9689129 | 9690812 | + | Conep17aG0144700.1 | Cone17ag1410 | 456887 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag1410 | 239 | SMART | tha2 | 14 | 234 | IPR001938 | - | |
| Cone17ag1410 | 239 | Pfam | Thaumatin family | 18 | 234 | IPR001938 | - | |
| Cone17ag1410 | 239 | PIRSF | PR5 | 1 | 239 | IPR001938 | - | |
| Cone17ag1410 | 239 | ProSiteProfiles | Thaumatin family profile. | 11 | 234 | IPR001938 | - | |
| Cone17ag1410 | 239 | PRINTS | Pathogenesis-related protein signature | 61 | 72 | IPR001938 | - | |
| Cone17ag1410 | 239 | PRINTS | Pathogenesis-related protein signature | 224 | 233 | IPR001938 | - | |
| Cone17ag1410 | 239 | PRINTS | Pathogenesis-related protein signature | 113 | 129 | IPR001938 | - | |
| Cone17ag1410 | 239 | PRINTS | Pathogenesis-related protein signature | 13 | 25 | IPR001938 | - | |
| Cone17ag1410 | 239 | SUPERFAMILY | Osmotin, thaumatin-like protein | 12 | 234 | IPR037176 | - | |
| Cone17ag1410 | 239 | FunFam | THAUMATIN-LIKE PROTEIN 1 | 12 | 234 | - | - | |
| Cone17ag1410 | 239 | Gene3D | Thaumatin | 12 | 234 | IPR037176 | - | |
| Cone17ag1410 | 239 | CDD | TLP-PA | 13 | 233 | - | - | |
| Cone17ag1410 | 239 | PANTHER | OS03G0233200 PROTEIN | 4 | 234 | IPR001938 | GO:0005576(PANTHER)|GO:0006952(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag1410 | Cone-Chr17:9689129 | Cone3ag1190 | Cone-Chr3:30563508 | 3.76E-120 | dispersed | |
| Cone17ag1410 | Cone-Chr17:9689129 | Cone17ag1411 | Cone-Chr17:9697385 | 4.50E-94 | tandem | |
| Cone5ag0752 | Cone-Chr5:3233350 | Cone17ag1410 | Cone-Chr17:9689129 | 5.40E-49 | transposed | |
| Cone17ag1410 | Cone-Chr17:9689129 | Cone20ag0072 | Cone-Chr20:349185 | 3.98E-170 | wgd | |
| Cone17ag1410 | Cone-Chr17:9689129 | Cone4ag1978 | Cone-Chr4:13879218 | 9.13E-145 | wgd | |
| Cone17ag1410 | Cone-Chr17:9689129 | Cone6ag1687 | Cone-Chr6:12785740 | 2.35E-22 | wgd | |
| Cone17ag1410 | Cone-Chr17:9689129 | Cone7ag1896 | Cone-Chr7:12165863 | 5.44E-74 | wgd | |
| Cone17ag1410 | Cone-Chr17:9689129 | Cone8ag0854 | Cone-Chr8:8476467 | 1.99E-125 | wgd | |
| Cone17ag1410 | Cone-Chr17:9689129 | Cone9ag1608 | Cone-Chr9:11503598 | 7.75E-119 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag1410 | - | - | - | 0.0 |