Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1413 ATGGCCGAATCGCCATTTCAGTCGCGGGAGCAATCGATTTCGGAACCGGATAATTCTGAATACTGGTGCTATCACTGCGAAAAGCATGTCTCAATTGAAACCCTAGCTAATCTCTCAGACATCGTCTGCCATGAATGCAAGAACGGTTTCATCGAATCAGTTCCGGCAGTTCCACGTTCGTCGTCTACTCTACCTTCTGGATCTTCCGATCACGTTGACGATCCGTCTTTCGGCTCACAATTCATCCAAGTTCTTCGACTACTCGCACAGACAGCGAGTGACGAAGACGCTCCTGCTCCGCCGCCTCAGAATTATTCATCCGAAGACGATTTCCTCAGGATAGAGTTGAACGGATGGGATAACGAAGAGGACGAAGAAGATGCAAACGGAGTTGAGTATCACGTTGAACAAGAGGAAGAAAACGGCGATGATGAAGAATATGGAAATAGATCTGTCGTCGCCGATGATGAAGGGAATGAAGAGTCGGAACTGAGAGATGACGATGATCTCCGGCGAACTAGGAACGATGTTCTTCGTCTTCGTATTAGGGACTTTGCTACGCGAGCGCAAAGTGGGAGGAACCGGATCCTCGATTGGGCTGAGATCTTGATGGGCCTTGAGGACAATTCCATTGAGTTCCGGCTAGAGATGCCTGATTCGGATAGATATATCGGTAATCCAGCGGATTACGTGGACGCAGCTGGATACGAGGCTCTACTGCAAACACTGGCGGAGAACGACGGAGTTGGAAGAAGAGGTGCTCCGCCGGCGTCCAAATCAGCAATATCAGCCATACCAACGGTGGAGATCAAATCGGAGCAAGAAGCTCTGTTATGCGCTGTATGCAAAGATATGGTCAGCGTTGGAGATATTGCAAAGAAATTGCCCTGTGGCCATGGTTACCATGGGGACTGCATAATTCCATGGCTCGGTTCGAGAAATTCATGTCCAGTTTGTCGGTTTGAGCTGCCAACAGATGATGCCGAGTATGAGGAGGAGAAGAAGAGGAAGAATAAAGTGACGGCAAATGATGGTGGTGCTTCCAGTTCAAGTGGAGATAATTTGATTTCAGATTGA 1077 48.56 MAESPFQSREQSISEPDNSEYWCYHCEKHVSIETLANLSDIVCHECKNGFIESVPAVPRSSSTLPSGSSDHVDDPSFGSQFIQVLRLLAQTASDEDAPAPPPQNYSSEDDFLRIELNGWDNEEDEEDANGVEYHVEQEEENGDDEEYGNRSVVADDEGNEESELRDDDDLRRTRNDVLRLRIRDFATRAQSGRNRILDWAEILMGLEDNSIEFRLEMPDSDRYIGNPADYVDAAGYEALLQTLAENDGVGRRGAPPASKSAISAIPTVEIKSEQEALLCAVCKDMVSVGDIAKKLPCGHGYHGDCIIPWLGSRNSCPVCRFELPTDDAEYEEEKKRKNKVTANDGGASSSSGDNLISD 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9701349 9703167 + Conep17aG0145000.1 Cone17ag1413 456890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1413 358 SMART ring_2 279 319 IPR001841 -
Cone17ag1413 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 326 IPR013083 -
Cone17ag1413 358 ProSiteProfiles Zinc finger RING-type profile. 279 320 IPR001841 -
Cone17ag1413 358 SUPERFAMILY RING/U-box 273 326 - -
Cone17ag1413 358 MobiDBLite consensus disorder prediction 327 341 - -
Cone17ag1413 358 FunFam E3 ubiquitin-protein ligase RING1-like 242 326 - -
Cone17ag1413 358 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 16 325 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone17ag1413 358 MobiDBLite consensus disorder prediction 327 358 - -
Cone17ag1413 358 MobiDBLite consensus disorder prediction 136 168 - -
Cone17ag1413 358 Pfam Ring finger domain 279 320 IPR001841 -
Cone17ag1413 358 Pfam zinc-ribbon 20 53 IPR039525 GO:0061630(InterPro)
Cone17ag1413 358 MobiDBLite consensus disorder prediction 342 358 - -
Cone17ag1413 358 MobiDBLite consensus disorder prediction 56 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1413 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1413 Cone-Chr17:9701349 Cone3ag0351 Cone-Chr3:1776797 2.55E-31 dispersed
Cone19ag0028 Cone-Chr19:200897 Cone17ag1413 Cone-Chr17:9701349 5.82E-32 transposed
Cone17ag1413 Cone-Chr17:9701349 Cone20ag0070 Cone-Chr20:337042 2.34E-208 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1413 Cone20ag0070 . . . . Blo17g00233 . Bda08g01214 . . Bpe05g00145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017293 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6