Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1419 ATGGCCGTCGAGGCTCAGTTCTATTCGGAAAACTTGGGCCTGCAATCGCAAACCATGTACTGGAATTCGAATCCTGCAACAGATTCTGGATTGGATGGAAACGGGATGATCTGTTCGAATCAAGGCGGGCTTATGAATCCTTTCTCTTCTTTTTCTAATGGATTTCTTCAATCACTGAATGCTGAGCTGGAGTTTCAGCGGCAGGAAATCGACTACATTCTTCAATCGCAGAATGAAACACTGAGTTTCGCTCTGCGAGAACACATGAAGCATCAATTTTCTTCAATCTTAACCAGCTTCGAGGCAAGCACGTCGGGTTTGATGAGGCAGAAGGAAGAGGATTTGGCACAAGCGAGAAAGAAAACTGTGCAGCTTGAAGAATGGTTGAAGAAAGCAGAAGTGAAGATCAACACGTGGCAGGAATTAGCAAGAGCGAAGGAAGCTACTGTCATGGAATTGAACAAGAAGATAGAAGAGGTTAGAGAGAGAGTGGCCATGATAAAAAACAACAGTAACAGAGGAGCAGCAGAAGAAGAAGATGCGGAGTCATGCTCGGGATCATGTGATGATGATCATAGATCGGACGGTGCTCATGACATTCATGATCATAATAAGGGCAAAAAGTTGGCTTGTAAGAATTGCGAGAATGAAAGAAGCTGCGTTCTTTTCCTTCCCTGTCGCCATATCTGCTCCTGCAAATCTTGTGAGGCTTCTCTTGCCTCCTGTCCTGTTTGTAAATCTGTGAAAGAGGCCAGCTTTGAAATCTTTTTTGGTCTCGAACAAAATTAA 789 43.98 MAVEAQFYSENLGLQSQTMYWNSNPATDSGLDGNGMICSNQGGLMNPFSSFSNGFLQSLNAELEFQRQEIDYILQSQNETLSFALREHMKHQFSSILTSFEASTSGLMRQKEEDLAQARKKTVQLEEWLKKAEVKINTWQELARAKEATVMELNKKIEEVRERVAMIKNNSNRGAAEEEDAESCSGSCDDDHRSDGAHDIHDHNKGKKLACKNCENERSCVLFLPCRHICSCKSCEASLASCPVCKSVKEASFEIFFGLEQN 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9730656 9731529 + Conep17aG0145700.1 Cone17ag1419 456896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1419 262 PIRSF SBP1_RNase_bind 26 258 - -
Cone17ag1419 262 ProSiteProfiles Zinc finger RING-type profile. 211 246 IPR001841 -
Cone17ag1419 262 Coils Coil 129 170 - -
Cone17ag1419 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 257 IPR013083 -
Cone17ag1419 262 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 191 257 - -
Cone17ag1419 262 Pfam Zinc finger, C3HC4 type (RING finger) 209 249 - -
Cone17ag1419 262 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 47 257 - GO:0004842(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1419 K19042 - - vvi:100252373 209.534
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1419 Cone-Chr17:9730656 Cone3ag1482 Cone-Chr3:33500188 1.18E-17 dispersed
Cone12ag1234 Cone-Chr12:9562312 Cone17ag1419 Cone-Chr17:9730656 5.31E-35 wgd
Cone17ag1419 Cone-Chr17:9730656 Cone8ag1287 Cone-Chr8:10573367 1.14E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1152 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016270 0 0 0 0 1 0 1 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 1 0 0 0 0 1 0 8