Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1424 ATGGCCGAATTCCTAATATCCTGCATCTTCTTCATTGGCTGTGCTTATAACCTCTTCTTCAATGCCAATGCGTTTACTTCTTCCGGCTGGACCAAAGCCCACGCCACCTTCTACGGCGGTAGTGACGCCTCCGGAACAATGGGCGGAGCTTGCGGATATGGGAATTTGTACTCGACTGGGTATGGGACGAGGACGGCAGCTCTGAGCACAGCACTGTTCAACGACGGAGCTGCTTGTGGTCAATGCTATCGGATCATATGCGATTACAAAACAGATCCCACTTGGTGTAGAAAGGGAGTGTCTGTTACTATAACTGCTACGAATTTCTGCCCTCCAAATTACGCTCAAGCTAGCGACGATGGCGGTTGGTGCAATCCCCCTCGCCAGCACTTCGACATGGCGCAGCCCGCTTGGGAGAAGATCGGTGTCTACAAAGGCGGCATCGTCCCCGTTTTGTACCAGAGGGTAGCTTGCGTGAAGAAGCATGGAGTGAGATTCACGATCAACGGACGAGATTACTTTGAGCTAGTTTTGATATCAAATGTGGGTGGGGCAGGATCTGTTTCATCTGTTATGATCAAAGGTTCTAAAACGAACTGGATCTCGATGTCGAGAAACTGGGGAGCGAACTGGCAGTCCAATAATTATCTAAACGGCCAATCACTGTCTTTCTCTGTCACAACTACGGATGGGCAGACCAGAGTTTTTAACAATATCGTGCCTTCTAATTGGCAATTTGGTCAAACTTATGCTGCAAGTGCTACCCTGCAATTCACTTGA 780 48.97 MAEFLISCIFFIGCAYNLFFNANAFTSSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGAACGQCYRIICDYKTDPTWCRKGVSVTITATNFCPPNYAQASDDGGWCNPPRQHFDMAQPAWEKIGVYKGGIVPVLYQRVACVKKHGVRFTINGRDYFELVLISNVGGAGSVSSVMIKGSKTNWISMSRNWGANWQSNNYLNGQSLSFSVTTTDGQTRVFNNIVPSNWQFGQTYAASATLQFT 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9750694 9751661 - Conep17aG0146200.1 Cone17ag1424 456901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1424 259 PRINTS Expansin signature 138 151 IPR002963 GO:0009664(InterPro)
Cone17ag1424 259 PRINTS Expansin signature 209 230 IPR002963 GO:0009664(InterPro)
Cone17ag1424 259 PRINTS Expansin signature 174 195 IPR002963 GO:0009664(InterPro)
Cone17ag1424 259 PRINTS Expansin signature 238 254 IPR002963 GO:0009664(InterPro)
Cone17ag1424 259 PRINTS Expansin signature 121 138 IPR002963 GO:0009664(InterPro)
Cone17ag1424 259 PRINTS Expansin signature 162 174 IPR002963 GO:0009664(InterPro)
Cone17ag1424 259 PRINTS Expansin signature 60 74 IPR002963 GO:0009664(InterPro)
Cone17ag1424 259 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cone17ag1424 259 PRINTS Expansin signature 102 112 IPR002963 GO:0009664(InterPro)
Cone17ag1424 259 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576(InterPro)
Cone17ag1424 259 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576(InterPro)
Cone17ag1424 259 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576(InterPro)
Cone17ag1424 259 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576(InterPro)
Cone17ag1424 259 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576(InterPro)
Cone17ag1424 259 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576(InterPro)
Cone17ag1424 259 Gene3D - 17 158 IPR036908 -
Cone17ag1424 259 Pfam Lytic transglycolase 65 153 IPR009009 -
Cone17ag1424 259 SMART dpbb_1 65 153 IPR007112 -
Cone17ag1424 259 FunFam Expansin 20 159 - -
Cone17ag1424 259 SUPERFAMILY PHL pollen allergen 160 251 IPR036749 -
Cone17ag1424 259 Gene3D - 161 258 IPR036749 -
Cone17ag1424 259 CDD DPBB_EXPA_N 29 158 - -
Cone17ag1424 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 163 IPR007112 -
Cone17ag1424 259 FunFam Expansin 163 256 - -
Cone17ag1424 259 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cone17ag1424 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cone17ag1424 259 SUPERFAMILY Barwin-like endoglucanases 19 181 IPR036908 -
Cone17ag1424 259 PANTHER EXPANSIN-A15 22 252 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1424 Cone-Chr17:9750694 Cone1ag1621 Cone-Chr1:57641927 9.82E-116 dispersed
Cone17ag1424 Cone-Chr17:9750694 Cone20ag0059 Cone-Chr20:286845 1.30E-188 wgd
Cone17ag1424 Cone-Chr17:9750694 Cone4ag1994 Cone-Chr4:13949158 5.02E-144 wgd
Cone17ag1424 Cone-Chr17:9750694 Cone7ag1908 Cone-Chr7:12234001 4.52E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1424 - - - 0.0