Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1426 ATGCCATGGCTTGCCATTCCATTCTCCGACTTAGAAACAAAGAAAAACTTAAATAAGAAGTTCGACATTGAAGGCATTCCAAGCTTAGTCGTAATGCAACCTCACGATAACAAGGACGAAGAATTGATACACGACGGTGTCGAGCTCGTATACCGATACGGCGTCGAAGCATTCCCTTTTACTCGGGAGCGGCTGCATGAATTGGAAATGCAAGAGAGGGAAAGACAAGAGAATCAGACACTAATCAATTTACTAACAAATCTGGATAGAGACTATCTCTTGGGTCGTCCCATGCTTAGAAAGGTGCCTGTTGCATCACTGGTAGGTAAGACAATAGGACTGTATTTCACAGCAGAATGGTGCAGCCCAGGAGTGAAGTTCACATCCAGGCTCATCTTTGTCTACCACAAAATAAAGCAACAACTAGTAGGCAAGCAAGGAAATGAGGATTTTGAGATAGTTTTGGTCTCAAGTGATCGTGACCAGACATCGTTTTCTTCACACTTCGAGTCGATGCCGTGGCTCTGTTTGCCATTTGGAGATCCAATGTACAGGAACCTCGTGAGGCATTTTGACGTGCAAGGGATACCTTGTTTGATAATACTCGGGCCAGACGGTAAAACCGTGACGAAAAATGGAAGGAATCTGATTAATTTGTATAAGGAGAATGCTTATCCTTTTACTGAGGCTAAATTAGAGTCGATAGAGAAACAGATGAATGAGGAAGCGAAGAGCTTTCCTAGATCAGTGACACATCAGGGACACAGACATGAGATTACTTTGGTGTCTGAAGGGAATGGAGGAGGACCGTTCATTTGCTGTGATTGTGATGAACAGGGCTCTGGCTGGGCTTATCAGTGCCTAGATTGTGGGTATGAGGTGCACACTAAGTGTGTTAGTACTACTACTGCTGTTGTGCTGGATCCTGGCTCCACCTAA 939 44.41 MPWLAIPFSDLETKKNLNKKFDIEGIPSLVVMQPHDNKDEELIHDGVELVYRYGVEAFPFTRERLHELEMQERERQENQTLINLLTNLDRDYLLGRPMLRKVPVASLVGKTIGLYFTAEWCSPGVKFTSRLIFVYHKIKQQLVGKQGNEDFEIVLVSSDRDQTSFSSHFESMPWLCLPFGDPMYRNLVRHFDVQGIPCLIILGPDGKTVTKNGRNLINLYKENAYPFTEAKLESIEKQMNEEAKSFPRSVTHQGHRHEITLVSEGNGGGPFICCDCDEQGSGWAYQCLDCGYEVHTKCVSTTTAVVLDPGST 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9756747 9759377 + Conep17aG0146400.1 Cone17ag1426 456903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1426 312 Pfam Thioredoxin-like 109 207 IPR012336 -
Cone17ag1426 312 SUPERFAMILY Cysteine-rich domain 239 301 IPR046349 -
Cone17ag1426 312 PANTHER THIOREDOXIN 1 286 IPR052259 -
Cone17ag1426 312 SUPERFAMILY Thioredoxin-like 101 210 IPR036249 -
Cone17ag1426 312 Gene3D Glutaredoxin 1 61 - -
Cone17ag1426 312 Gene3D Glutaredoxin 96 229 - -
Cone17ag1426 312 Pfam C1 domain 254 299 IPR004146 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1426 K17609 - - mdm:103450351 482.641
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1426 Cone-Chr17:9756747 Cone19ag1033 Cone-Chr19:7677626 2.44E-74 dispersed
Cone17ag1426 Cone-Chr17:9756747 Cone20ag0057 Cone-Chr20:279156 5.85E-217 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1426 Cone20ag0057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30