Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1428 ATGGCGAGAGGAAGGAATAGTACTAGACTACAACAGGGCAAGAAGTCATCGACATTGACGCTCGTCTTCTCCATGCTCTTCATGCTCACAGTAGTGCTTCTCATCCTTCTTGCGCTCGGGATCTTTTCTCTTCCCGTCAGCTCCGATCAATCCGCGCTCAATGATCTTAGTTCCTTCAGGCGCCAGACGGTCGCGCAAGGTAAAGGGTTGGGAAAGAGAGGGGATCAGTGGACAGAGATTCTTTCTTGGGAGCCCAGAGCTTTCATTTATCATAATTTCTTGTCTAATGAAGAATGTGATCACTTGATAAGCTTAGCAAAACCTCATATGGTGAAATCAACTGTTGTTGATAACGAGACTGGAAAGAGCAAAGACAGCAGAGTGCGAACAAGTTCAGGCACATTTTTGAGGAGAGGGCGTGACAAAATCATCCATCTTATAGAGAAAAGAATTGCCGACTTCACGTTTATTCCTAGCATGGTGAAGGGCTTCAAGTTCTGCATTATGAAGTTGGGCAGAAGTATGATGCCCATTATGATTACTTCCTTGACGAGTTCAACACCAAGAATGGAGGGCAGCGTATTGCTACTCTTCTTATGTATTTGTCAGATGTCGAAGAAGGAGGTGAGACCGTATTTCCTGAGTCGAAAGCAAATATCAGTTCTGTGCCATGGTGGAATGAATTGTCTGAATGTGGAAAGACCGGTCTCTCTGTCAAGCCCATAA 726 44.9 MARGRNSTRLQQGKKSSTLTLVFSMLFMLTVVLLILLALGIFSLPVSSDQSALNDLSSFRRQTVAQGKGLGKRGDQWTEILSWEPRAFIYHNFLSNEECDHLISLAKPHMVKSTVVDNETGKSKDSRVRTSSGTFLRRGRDKIIHLIEKRIADFTFIPSMVKGFKFCIMKLGRSMMPIMITSLTSSTPRMEGSVLLLFLCICQMSKKEVRPYFLSRKQISVLCHGGMNCLNVERPVSLSSP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9762965 9764788 - Conep17aG0146600.1 Cone17ag1428 456905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1428 241 Gene3D q2cbj1_9rhob like domain 78 176 - -
Cone17ag1428 241 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 73 161 IPR045054 GO:0004656(PANTHER)|GO:0005783(PANTHER)|GO:0018401(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1428 K00472 - - ath:AT1G20270 211.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1428 Cone-Chr17:9762965 Cone2ag0167 Cone-Chr2:892638 1.17E-24 dispersed
Cone12ag0841 Cone-Chr12:7590060 Cone17ag1428 Cone-Chr17:9762965 2.45E-54 wgd
Cone17ag1428 Cone-Chr17:9762965 Cone6ag1709 Cone-Chr6:12890636 1.16E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1428 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054731 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1