Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone17ag1432 | ATGAGCTCCCATGAAGCTATTGTTATGGACCCAACTATTTTCTGGGACATTCTAAAGCGCTTTCATACCAAGATGAACTCTAAATTCATGGTTCCTGTTATTGGAGGAAAAGAGCTTGACCTGCATATATTATATTCAGAGGTTACAAAAAGGGGTGGTTATGAAACGGTAGTTGCAGAGAAGAAATGGAGAGAAGTAGGGAATGTATTCTGCTTCTCCTCAACAACAACAAGTGCTTCTTTTGTATTGAGGAGGCACTACTTTAAGCTTCTTTACCATTTTGAGCACCTTTACTTCTTTCAGAGACGGAGTCCTCCTCTTTCTAGTATTAAGCCAACTGCACATTCTTTTAGCAACCCATCATGCAAGAACGAATTGGCACTTGTAGAATACACCCCCAAAACGACGCCATTTCACCCATCTCCGCCTGTTGAAGGGATTGGAACAATTGAAGGGAAGTTTGAATGTGGTTATTTGGTGACTGTAAAACTGGGTTCTGAGATTCTCAGGGGAGTACTTTACCATCCAGAGCAGGTTGATGATGAACTTAATCCTACGGTTCCCCAATATAACAATAATGCCATTGTTCCATACACTGGAAAGCGGCAAGTTTTCAGTTACCGTCGTCGCCGGAGAAGCAGACGCAGAGCAGATCCTAATTACCCAAAACCGAACAGGAGCGGTTACAACTTCTTCTTTGCGGAAAAGCATTACAAGCTCAAATCTCTATACCCAAACAGAGAGAGGGAGTTTACAAAGATGATAGGAGCGTCTTGGAACAGTCTCAGTCCGGAAGACAGGATGGTTTACCAGAACATCAGCGTGAAAGATAAGGAAAGATACAAAAGGGAGTTGAAAGAGTACAAGGAGAGAATGAGACCGACCATGGATGATGAGGCAGCTGCTTCTCATCAGTAG | 918 | 42.92 | MSSHEAIVMDPTIFWDILKRFHTKMNSKFMVPVIGGKELDLHILYSEVTKRGGYETVVAEKKWREVGNVFCFSSTTTSASFVLRRHYFKLLYHFEHLYFFQRRSPPLSSIKPTAHSFSNPSCKNELALVEYTPKTTPFHPSPPVEGIGTIEGKFECGYLVTVKLGSEILRGVLYHPEQVDDELNPTVPQYNNNAIVPYTGKRQVFSYRRRRRSRRRADPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGASWNSLSPEDRMVYQNISVKDKERYKRELKEYKERMRPTMDDEAAASHQ | 305 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 9780674 | 9782010 | - | Conep17aG0147200.1 | Cone17ag1432 | 456909 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone17ag1432 | 305 | SMART | bright_3 | 9 | 100 | IPR001606 | GO:0003677(InterPro) | |
| Cone17ag1432 | 305 | Pfam | HMG (high mobility group) box | 222 | 289 | IPR009071 | - | |
| Cone17ag1432 | 305 | Gene3D | High mobility group box domain | 206 | 305 | IPR036910 | - | |
| Cone17ag1432 | 305 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 222 | 289 | IPR009071 | - | |
| Cone17ag1432 | 305 | SMART | ARID_2 | 5 | 95 | - | - | |
| Cone17ag1432 | 305 | CDD | ARID_HMGB9-like | 10 | 95 | IPR045303 | GO:0003677(InterPro) | |
| Cone17ag1432 | 305 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 2 | 297 | - | - | |
| Cone17ag1432 | 305 | Pfam | ARID/BRIGHT DNA binding domain | 13 | 95 | IPR001606 | GO:0003677(InterPro) | |
| Cone17ag1432 | 305 | SUPERFAMILY | HMG-box | 219 | 293 | IPR036910 | - | |
| Cone17ag1432 | 305 | ProSiteProfiles | ARID domain profile. | 8 | 99 | IPR001606 | GO:0003677(InterPro) | |
| Cone17ag1432 | 305 | SUPERFAMILY | ARID-like | 5 | 106 | IPR036431 | GO:0003677(InterPro) | |
| Cone17ag1432 | 305 | CDD | HMG-box_AtHMGB9-like | 222 | 288 | - | - | |
| Cone17ag1432 | 305 | Gene3D | - | 5 | 110 | IPR036431 | GO:0003677(InterPro) | |
| Cone17ag1432 | 305 | SMART | hmgende2 | 221 | 290 | IPR009071 | - | |
| Cone17ag1432 | 305 | Coils | Coil | 271 | 298 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag1432 | Cone-Chr17:9780674 | Cone4ag0406 | Cone-Chr4:1842806 | 1.19E-67 | dispersed | |
| Cone17ag1432 | Cone-Chr17:9780674 | Cone20ag0052 | Cone-Chr20:254125 | 1.03E-206 | wgd | |
| Cone17ag1432 | Cone-Chr17:9780674 | Cone4ag1987 | Cone-Chr4:13923663 | 4.04E-140 | wgd | |
| Cone17ag1432 | Cone-Chr17:9780674 | Cone7ag1916 | Cone-Chr7:12263604 | 1.63E-140 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45125 | PF01412 | ArfGap | 6.50E-27 | No_clan | Cone | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone17ag1432 | - | - | - | 0.0 |