Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1442 ATGGGCTGCTCCACCTCCAGACTCGACAATCTACCGGCCGTTGCTCTGTGCCGTGACCGCTGCAAATTCCTGGACGAAGCAATCCGATGTAGTCACTCTCTGGCTGATGCCCACTCGGCCTACATGGAGTCTCTAAAAACACTCGGTCTTGCTCTTCACCGTTTCTTCCATCAAAATCACACCTTTCATACCCATTCGCCTCCGATCAACGGTGATCCTATTAAACCATCTCCGCCCGAAGCAGCTACATTTGATCACTCCCCTTCGAGTTCAGATTCAGACTCCCAACAACACTTCCCTTCTGATTCTGGCGACGAAGATAGCGAGAAAGAATTTGGAGGTTCTCTTTCTCCCGCACATGAACAGTATATTTCAGATCATATCTTTACTAATTACACATACTATGGTTCGAAGCAATCTCCGCCTCCTCCACCGAGCAATTCCACCTGGGAGTTCTTGAATTTCTTCGATACGTTTGAGAGATACGAACCGGCTTTACCTCCTGTTTGGGATCGTGAGAGTGTGGGAAAACCTGAAGTGAAGCCAGCTGCAGACAAGGACAAAAAAGAGCGAGCAGTTGTAACAGATCAGCAGCGAGCTGCAGGTAAGAATTCAAAGGCGAAGAAGGATCATGCTCATGAGGAGAAGAAAAATCCAGACTTGTTGAAAAATGTCAGCAAGGAAAGAGGGGTCTCTGATTTGATGAAAGAAATTCAGCTTTTGTTTGAGAAAGCGTCCGATTCGGGCAATGAAGTTTCTAAATTGCTCTGTTATCGTCAGAGAATTGGTTCCAATCAAGTTTGTGGTTATCTGGGGTTTGAGAATTGGAGGAGTTTATCATGTACATTGAAGAAGATCTGCATATGGGAGAAGAAACTCTATGTGGAAGTCAAGGATGAGGAGAGACTGCGTTTAACTCTTGAGAAAAAATGTCGACAGCTGAAACAAATGGATGAGAAGCGAGGTGATGCTCGTAGGATGGAGTCAACTCGGACACTAATCAGGGATTTATCTACCAAATTGAAAGTCTCAATTCAGGTTGTTGATAGGATCTCAATCACCATAAGCAAGTTAAGAGATGGAGAGTTGAGGACCCATATCACTGATTTGATTCACGGATTACTTGGCATGTGGAAAGCTATGTCCGATTGTTTCAAGAACCAACACCGGACAATTGCAGAAATAAAAACAGTAAATATTACAGAAGGTTCCGATACTAAACTTGAAGACGATCATCTCGAAGCAACCATGCAACTTAAGTTTGAACTTCAAAACTGGATGTTAAGCTTCTCCAATTGGACTGTCACCCAAAAAGACTACGTCAGATCCTTAAACGGTTGGCTTCTCAGATGTCTACTTTACGAACCTGAAGAAACGCTCGATGGGTTACTACCCTTCTCTCCTGCTCAAATCGGCGCACCTCCCGTGTTTGGAACATGTAACTATTGGTCACAAGCTGTTGAAAAGATCTCTGAGAAAGAACTCATTGAAGCAATGCGTAGTTTTATTACAAGTATCGATCGAGTTTTGGAACGACATAATGCTGATGTGCAGCAAAGGTTGATATCGGATAAAGATATGGAGAGAAAAGCAAAGATGTTGGATAAAGAGGAGCAGAAAGTGATGATGATGATGATGCACGCCGATGTGGAGGAAAAGAGGAGACTTAGTTTACACAGCTTGAAGACTTTGCGTCCAAATGATCAGATTGTTAGCTCTAGTAATATGCAATTTGGATTGAAACAGATTTTCATAGCAATGGAGAGGTTTACCGGAAATTCCATGCAAGCGTATGAGGAGCTTTTTGTACGAATCGAAGAGGTCAAGGTTGGTGGAGCAGAGGATCTTCAAACAGGTCCTTAG 1863 43.42 MGCSTSRLDNLPAVALCRDRCKFLDEAIRCSHSLADAHSAYMESLKTLGLALHRFFHQNHTFHTHSPPINGDPIKPSPPEAATFDHSPSSSDSDSQQHFPSDSGDEDSEKEFGGSLSPAHEQYISDHIFTNYTYYGSKQSPPPPPSNSTWEFLNFFDTFERYEPALPPVWDRESVGKPEVKPAADKDKKERAVVTDQQRAAGKNSKAKKDHAHEEKKNPDLLKNVSKERGVSDLMKEIQLLFEKASDSGNEVSKLLCYRQRIGSNQVCGYLGFENWRSLSCTLKKICIWEKKLYVEVKDEERLRLTLEKKCRQLKQMDEKRGDARRMESTRTLIRDLSTKLKVSIQVVDRISITISKLRDGELRTHITDLIHGLLGMWKAMSDCFKNQHRTIAEIKTVNITEGSDTKLEDDHLEATMQLKFELQNWMLSFSNWTVTQKDYVRSLNGWLLRCLLYEPEETLDGLLPFSPAQIGAPPVFGTCNYWSQAVEKISEKELIEAMRSFITSIDRVLERHNADVQQRLISDKDMERKAKMLDKEEQKVMMMMMHADVEEKRRLSLHSLKTLRPNDQIVSSSNMQFGLKQIFIAMERFTGNSMQAYEELFVRIEEVKVGGAEDLQTGP 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9823982 9826250 - Conep17aG0148300.1 Cone17ag1442 456919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1442 620 MobiDBLite consensus disorder prediction 63 116 - -
Cone17ag1442 620 Pfam Protein of unknown function (DUF632) 276 507 IPR006867 -
Cone17ag1442 620 MobiDBLite consensus disorder prediction 99 114 - -
Cone17ag1442 620 MobiDBLite consensus disorder prediction 83 98 - -
Cone17ag1442 620 MobiDBLite consensus disorder prediction 169 224 - -
Cone17ag1442 620 Coils Coil 297 320 - -
Cone17ag1442 620 PANTHER UNCHARACTERIZED 1 607 - -
Cone17ag1442 620 MobiDBLite consensus disorder prediction 174 224 - -
Cone17ag1442 620 Pfam Protein of unknown function (DUF630) 1 58 IPR006868 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1442 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1263 Cone-Chr12:9701221 Cone17ag1442 Cone-Chr17:9823982 9.84E-110 dispersed
Cone17ag1442 Cone-Chr17:9823982 Cone3ag1238 Cone-Chr3:31137885 3.71E-108 dispersed
Cone17ag1442 Cone-Chr17:9823982 Cone20ag0035 Cone-Chr20:185490 0 wgd
Cone17ag1442 Cone-Chr17:9823982 Cone8ag1318 Cone-Chr8:10697277 3.57E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g121 . . . . . . . . Cmo05g01009 . . . . . Sed11g0843 . . Bhi04g01560 Tan02g1536 Cmetu03g1244 . Hepe08g1485 . Lcy13g2249 Cla08g00962 . . . . . . . . Cone17ag1442 Cone20ag0035 . . . Cme03g01356 . . . . . . . . . . . . Cma05g00991 Car05g00873 . Cpe11g00800 . . . . . . . . . . . . . . . Lsi08g00802 . Chy03g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012946 0 1 0 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 28