Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1452 ATGCTGTGTACCATAGAAAAGAAAGGAGCTTCTCTGTCAACATTCACCGATCGTGGACTAACAGCATTATGCCCAACTGCCTTCTTTCGATTCCTCCATCTCCATGGCCAATTGGCTCTTGAGGGTTTGGGTTTCGTTCTCTTTGGGATTCTCGATCCCTCACGGCCTCCTTCAATTTTTCTGTCAATCTTATTCCTCTTGCAAACAAACAGACACATAGAAGTAGGAACCCTAGCTTTCTTCTCTGGAATTTACTTCATATCCATGGTGATGGCCGGCGCCATAGATCAGGAAGGCGTTGTTGATATCGTGGATGAAGGAGATGAGCTCAGCTCACCGGATAATCATCACACTGACGAATTGGAGCTCGTTCAAGAATTGGTTGGTGTGATTGAATCCGTTGCCCGATATGGGGATTTTAAAAAATCGCACAGAAAGGAATGTCACAATCTGGTGCGGCGATTGAAGCTGCTTTTGCCGTTGTTCGAAGAGCTACGAGATCTTGAAGCGCCTATCACCCAGACCACAGCTGCTTGGTTGTCTAGTTTAAGGAAGGCGCTTCTTCTCGCCAGGAAACTGCTTAAGACTTGTAACGAAGGAAGCAAGATCTACCTGGCCCTCGAAAACGAATCGATTATGATCAAATTTCAAAGCGTGTATGAAAAACTAAGTAAAGCTCTGGATGATTTGTTACGTGATGAACCTGGAATCTCCGATGAAGTGCAAGAACAGGTTGAGTTGATTTGGACACAAATCAAGAGAGCAAAGAGACGAACAGACACCCAGGATATTGAGCTCGCCATGGATATGATGGTGGTATTCTCCACCACTGATGAACGAAATGCAGATAGTGCGATTATTGAAAGGCTTGCAAAGAAGATGGATCTACACACTATAGAGGACCTTAAGATAGAAACAATAGCTGTAAGAAATCTTGTCAAAAAGGGAGAATCAAAGGAAGAAAGCACCCAACACATCATTGAACTTCTCAACAAATTCAGAAATATTGCCGGGTTGGAAGAATCCAAAGTTCTTGTAGATCCCGTAATGCCTAAAACATTAGAGAAATGTCCATCTCTTGTAATCCCTCATGAATTCCTCTGTCCAATCACTTTGGAAATCATGACTGACCCTGTTATCATTGCCAGCGGACAGACATATGAGAGAGAGAGCATACTAAAATGGTTCGAAACAAACCATAAGACATGTCCAAAGACCAGACAAGGTCTACCTCACTTGTCTGTAGCGCCCAATTACGCCTTAAAAGCCATAATCCTACAATGGTGCGAGAAGAACAAATTCCAGATTCCCAAAAAGGAAATTTCCACAGACCAAGAAACTTCCTCTGCCGAACACAAGGAGGACATATCATCGATAGTTAAAAACCTTTCTTCCAATCACCTAGAAGTGCAAAGAAGATGCGTGAAGAAGATCCGTATACTCTCAAAAGAAAATCCCGAGAACAGAGTATTAATTGCTAGTTGTGGAGCAATCCAGCCATTAGTACATCTCCTTTCCTACCCCGATTCTAAGATCCAAGAACATGCTGTTACAGCACTGTTGAATCTGTCAATTGATGAGGCTAACAAGAGAATCATCGCAACAGAAGGTGCGATCCCATTTATTATACAAGTGTTGAGGAATGGGAGCATAGAGGCGAGGGAGAATTCTGCTGCAGCCCTGTTTAGCTTGTCAATGTTGGACGAGAATAAAGTAGCCGTAGGATTATCAGATGGAATACCGCCACTTGTTGATTTGTTGCAGAATGGAATGATTAGAGGCAAGAAAGATGCTGCTACTGCTCTTTTCAATCTGTCTCTCAATCATTCAAATAAGGCTAGAGCGATTTGTGCTGGAATTATTAAACCCTTACTTCAGCTACTTAAGGATACGAATTTGGGCATGGTTGATGAAGCATTATCAATCTTTCTTCTTCTTGCTTCGCATCCAGAAGGGCGGCAAGAAATCGGGCAGCTGTCTTTCATAGAAACTTTAGTTGAGTTTATGCGAAATGGGACTCCTAAGAATAAGGAGTGCGCAACTTCAGTTCTTCTCGAGTTGGGTTCGAATAATTCGACTTTTGTACTTTATGCTCTTCAGTTTGGAGTGTATGAGCATTTGATTGAGATTTCACAGAATGGAACAAATAGAGCTCAACGGAAAGCGAATGCATTGTTGCAGCTAATGAGCAAAAGTGAACAGATTCCTTGA 2211 42.42 MLCTIEKKGASLSTFTDRGLTALCPTAFFRFLHLHGQLALEGLGFVLFGILDPSRPPSIFLSILFLLQTNRHIEVGTLAFFSGIYFISMVMAGAIDQEGVVDIVDEGDELSSPDNHHTDELELVQELVGVIESVARYGDFKKSHRKECHNLVRRLKLLLPLFEELRDLEAPITQTTAAWLSSLRKALLLARKLLKTCNEGSKIYLALENESIMIKFQSVYEKLSKALDDLLRDEPGISDEVQEQVELIWTQIKRAKRRTDTQDIELAMDMMVVFSTTDERNADSAIIERLAKKMDLHTIEDLKIETIAVRNLVKKGESKEESTQHIIELLNKFRNIAGLEESKVLVDPVMPKTLEKCPSLVIPHEFLCPITLEIMTDPVIIASGQTYERESILKWFETNHKTCPKTRQGLPHLSVAPNYALKAIILQWCEKNKFQIPKKEISTDQETSSAEHKEDISSIVKNLSSNHLEVQRRCVKKIRILSKENPENRVLIASCGAIQPLVHLLSYPDSKIQEHAVTALLNLSIDEANKRIIATEGAIPFIIQVLRNGSIEARENSAAALFSLSMLDENKVAVGLSDGIPPLVDLLQNGMIRGKKDAATALFNLSLNHSNKARAICAGIIKPLLQLLKDTNLGMVDEALSIFLLLASHPEGRQEIGQLSFIETLVEFMRNGTPKNKECATSVLLELGSNNSTFVLYALQFGVYEHLIEISQNGTNRAQRKANALLQLMSKSEQIP 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9852855 9855351 + Conep17aG0149300.1 Cone17ag1452 456929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1452 736 CDD RING-Ubox_PUB 363 415 IPR045210 -
Cone17ag1452 736 Gene3D - 442 594 IPR011989 -
Cone17ag1452 736 SMART arm_5 485 525 IPR000225 GO:0005515(InterPro)
Cone17ag1452 736 SMART arm_5 649 689 IPR000225 GO:0005515(InterPro)
Cone17ag1452 736 SMART arm_5 567 607 IPR000225 GO:0005515(InterPro)
Cone17ag1452 736 SMART arm_5 526 566 IPR000225 GO:0005515(InterPro)
Cone17ag1452 736 SMART arm_5 608 648 IPR000225 GO:0005515(InterPro)
Cone17ag1452 736 SMART Ubox_2 365 428 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag1452 736 FunFam RING-type E3 ubiquitin transferase 120 233 - -
Cone17ag1452 736 Pfam U-box domain 362 433 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag1452 736 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 496 538 IPR000225 GO:0005515(InterPro)
Cone17ag1452 736 SUPERFAMILY RING/U-box 362 436 - -
Cone17ag1452 736 FunFam RING-type E3 ubiquitin transferase 362 434 - -
Cone17ag1452 736 FunFam RING-type E3 ubiquitin transferase 440 735 - -
Cone17ag1452 736 Gene3D - 595 735 IPR011989 -
Cone17ag1452 736 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 578 620 IPR000225 GO:0005515(InterPro)
Cone17ag1452 736 PANTHER U BOX DOMAIN-CONTAINING 142 731 - -
Cone17ag1452 736 SUPERFAMILY ARM repeat 454 731 IPR016024 -
Cone17ag1452 736 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 437 IPR013083 -
Cone17ag1452 736 ProSiteProfiles U-box domain profile. 361 435 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag1452 736 Pfam Armadillo/beta-catenin-like repeat 485 524 IPR000225 GO:0005515(InterPro)
Cone17ag1452 736 Pfam Armadillo/beta-catenin-like repeat 568 606 IPR000225 GO:0005515(InterPro)
Cone17ag1452 736 Gene3D - 117 232 IPR036537 GO:0007166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1269 Cone-Chr12:9729543 Cone17ag1452 Cone-Chr17:9852855 2.32E-201 dispersed
Cone17ag1452 Cone-Chr17:9852855 Cone5ag0357 Cone-Chr5:1515471 6.39E-92 dispersed
Cone17ag1452 Cone-Chr17:9852855 Cone8ag1322 Cone-Chr8:10723664 1.63E-25 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1452 - - - 0.0