Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1455 ATGTTTACGATAGTAGAGCTGAAGAGCGCGACGAGGAACTTTAGATCCTATACGGTGCTTGGGAAGGGCGGTTTCGGAAGGGTTTTCAAGGGCTGGATCGATCCTAACACCTACGCACCCTCCAAGGTCGGAGTTGGTATGCCAGTAGCCATTAAAAAATCTGATCCCGATAACAATCAGGGATTGCAGGAATGGCAGGCGGAGGTGAAGTTTCTGGGTAAGTTTTCTCATCCAAACCTTGTGAAGCTGGTCGGATTCTGTTGGGAAGAAAAGCAATTCCTACTGGTTTACGAGTACATGCAAAAAGGGAGCTTAGAGAACCACCTGTTCAACAACAAGAGTGGAGAACCACTTTCGTGGAAACTACGGCTGAATATAGCAATAGGCGCCGCGCGTGGGCTGGATTTCTTACACACACCGGAGAAGAACGTCATTTATCGGGACTTCAAGGCCTCCAATATCTTGTTGGACGGAGACCACAACGCCAAGCTCTCCGACTTTGGGCTCGCTAAACTGGGTCCGTCCAACGGAAATTCTCATGTCACGATGCGCATTCTTGGCACCTACGGATACGCAGCTCCGGAATATGTTGCAACCGCCCATTTGTACATTAAAAGTGATGTTTACGGTTTCGGAGTCGTTTTGCTGGAATTGCTAACTGGCCTTCCTGCGCTTGATACAACCCGGCCCAGTGGGTCTTACTCCTTGCTGGATTGGGCCAGGCCATCATTGGGTAATAAGAAAAAGCTCAACGAAATTATGGACCCAAGGCTAGGGGCAGACGACTCATCAAAAGGTGCAGCCCAAGCAGCCGCGCTTATACTCAAGTGTCTGGAATTGGATCCGAAAAATCGCCCTTCAATAGAACAAGTCTTGGAAACATTAGAGAAGATCAATGCCATCAAAGAAAAGCCCAAATACATAAGATCCAATGTTACAAGGCCGATGCCCAAAATTCACCAAACCTATCGGCCCAAAAATGGATCCTTGTAG 993 48.14 MFTIVELKSATRNFRSYTVLGKGGFGRVFKGWIDPNTYAPSKVGVGMPVAIKKSDPDNNQGLQEWQAEVKFLGKFSHPNLVKLVGFCWEEKQFLLVYEYMQKGSLENHLFNNKSGEPLSWKLRLNIAIGAARGLDFLHTPEKNVIYRDFKASNILLDGDHNAKLSDFGLAKLGPSNGNSHVTMRILGTYGYAAPEYVATAHLYIKSDVYGFGVVLLELLTGLPALDTTRPSGSYSLLDWARPSLGNKKKLNEIMDPRLGADDSSKGAAQAAALILKCLELDPKNRPSIEQVLETLEKINAIKEKPKYIRSNVTRPMPKIHQTYRPKNGSL 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9881338 9883497 - Conep17aG0149600.1 Cone17ag1455 456932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1455 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1455 330 FunFam Serine/threonine-protein kinase BIK1 1 99 - -
Cone17ag1455 330 Pfam Protein tyrosine and serine/threonine kinase 18 295 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1455 330 SUPERFAMILY Protein kinase-like (PK-like) 2 307 IPR011009 -
Cone17ag1455 330 ProSiteProfiles Protein kinase domain profile. 14 298 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1455 330 Gene3D Transferase(Phosphotransferase) domain 1 100 314 - -
Cone17ag1455 330 ProSitePatterns Protein kinases ATP-binding region signature. 20 53 IPR017441 GO:0005524(InterPro)
Cone17ag1455 330 Gene3D Phosphorylase Kinase; domain 1 1 99 - -
Cone17ag1455 330 CDD STKc_IRAK 20 298 - -
Cone17ag1455 330 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 100 308 - -
Cone17ag1455 330 PANTHER OS01G0588500 PROTEIN-RELATED 2 299 IPR050823 -
Cone17ag1455 330 PIRSF TyrPK_CSF1-R 13 116 - -
Cone17ag1455 330 PIRSF TyrPK_CSF1-R 111 222 - -
Cone17ag1455 330 PIRSF TyrPK_CSF1-R 267 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1455 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1455 Cone-Chr17:9881338 Cone20ag0022 Cone-Chr20:141578 1.44E-203 dispersed
Cone12ag0862 Cone-Chr12:7722427 Cone17ag1455 Cone-Chr17:9881338 1.14E-29 wgd
Cone17ag1455 Cone-Chr17:9881338 Cone20ag0021 Cone-Chr20:137719 2.85E-88 wgd
Cone17ag1455 Cone-Chr17:9881338 Cone8ag1330 Cone-Chr8:10751564 1.36E-136 wgd
Cone17ag1455 Cone-Chr17:9881338 Cone8ag0892 Cone-Chr8:8700114 5.62E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g92 . . . . . . . . . Cmo12g00617 . . . Car12g00659 . . Cpe07g00590 . . . . . . . . . . . . . . . . Cone17ag1455 . . . . . Blo17g00905 . . . . . . . . . . Cma12g00679 . Car05g00857 . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82293 PF13639 zf-RING_2 9.80E-11 CL0229 Cone PK