Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1456 ATGGGTTGCTTTACCTGCTTCACTACTCGCCGGAAAGATGCCAGCAAGGTCGTCACAGATAATGGCACACGATCCACCTCTCGCCATTCAGTCGATTCCTTAGGTAGTGGGAAGGGAAAGTCTAATTTCAATGGTAGTCGGGGCAACAGTGGAAGCAGCCCCAGATGCAGTGCTGCCCGTAGTTTCACATTCCGTGAACTGGCGGCTGCCACTAGAGGATTTAAGGAAGTTAATTTGATTGGTGAAGGGGGGTTTGGAAGGGTTTATAAAGGACGCTTAGAATCAAGCCAGGTTGTTGCAATTAAACAACTTAATCATCAAGGGCTTCAAGGGTATCAAGAATTCATTGTTGAGGTTCTCATGTTAAGCCTGTTACACCACCCTAATCTTGTGACCTTGATTGGTTACTGCACTGATGGAGATCAAAGACTCTTGGTTTATGAGTACTTGCCCCTAGGAAGCTTGGAAGATCATCTTTTTGATTTGGACCCTGAAAAGGGCCCCCTGAGCTGGAATACTCGGATTAAGATTGCCGTTGGTGCAGCCCGGGGCTTAGAGTATCTCCACTGCAAAGCAACCCCACCTGTTATCTACCGTGACTTGAAATCACCTAATATCTTGTTAGATAATGAGTTCAACCCAAAGCTCTCAGATTTTGGACTTGCGAAACTGGGTCCTGTCGGCGAGAATACTCATGTCTCGACTAGAGTTATGGGAACATACGGACATTGTGCTCCAGAGTATGCAATGAGTGGCAAGTTGACCCTTAAATCTGATATCTACAGCTTTGGTGTGGTTCTCTTGGAGCTCATCACTGGACGGAAGGCAATTGACGTTACGAAGAAACAGGGGGAACAGAACCTAGTCTCATGGTCCCGTCCTTTTTTGAAGGACCGGAGGAAGTTTGTGCAATTAGTAGATCCTCTGTTGCAAGGACACTATCCTGTCCGTTGTCTGCATCATGCTATTGCAATTACAGCCATGTGTCTTCAAGAGCAGCCAACCTTCCGCCCTTTAATCAGTGATATTGTTGTTGCACTCGAGTATTTGGCCACTCAAGGTAGCCCTCAGGAAATCCAGGAGGGTGGGGTCTGCAGTCCGTCACAACCGCCTTCGCTACAGGGCAGGAACTCGTTTTCCTGGGAATCTAATTCAAGAATGAATTCAACAAATATTTAA 1179 46.65 MGCFTCFTTRRKDASKVVTDNGTRSTSRHSVDSLGSGKGKSNFNGSRGNSGSSPRCSAARSFTFRELAAATRGFKEVNLIGEGGFGRVYKGRLESSQVVAIKQLNHQGLQGYQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYLPLGSLEDHLFDLDPEKGPLSWNTRIKIAVGAARGLEYLHCKATPPVIYRDLKSPNILLDNEFNPKLSDFGLAKLGPVGENTHVSTRVMGTYGHCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKAIDVTKKQGEQNLVSWSRPFLKDRRKFVQLVDPLLQGHYPVRCLHHAIAITAMCLQEQPTFRPLISDIVVALEYLATQGSPQEIQEGGVCSPSQPPSLQGRNSFSWESNSRMNSTNI 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9885707 9888624 - Conep17aG0149700.1 Cone17ag1456 456933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1456 392 SUPERFAMILY Protein kinase-like (PK-like) 48 348 IPR011009 -
Cone17ag1456 392 ProSiteProfiles Protein kinase domain profile. 74 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1456 392 MobiDBLite consensus disorder prediction 19 55 - -
Cone17ag1456 392 Pfam Protein kinase domain 75 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1456 392 SMART serkin_6 74 350 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone17ag1456 392 FunFam Serine/threonine-protein kinase PBS1 150 362 - -
Cone17ag1456 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone17ag1456 392 ProSitePatterns Protein kinases ATP-binding region signature. 80 102 IPR017441 GO:0005524(InterPro)
Cone17ag1456 392 PANTHER OS07G0668900 PROTEIN 40 359 - -
Cone17ag1456 392 FunFam probable serine/threonine-protein kinase RLCKVII 47 149 - -
Cone17ag1456 392 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Cone17ag1456 392 Gene3D Transferase(Phosphotransferase) domain 1 150 362 - -
Cone17ag1456 392 MobiDBLite consensus disorder prediction 358 392 - -
Cone17ag1456 392 CDD STKc_IRAK 80 348 - -
Cone17ag1456 392 MobiDBLite consensus disorder prediction 15 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1456 Cone-Chr17:9885707 Cone20ag0021 Cone-Chr20:137719 9.55E-265 dispersed
Cone7ag1939 Cone-Chr7:12379480 Cone17ag1456 Cone-Chr17:9885707 3.81E-49 dispersed
Cone17ag1456 Cone-Chr17:9885707 Cone4ag2022 Cone-Chr4:14062413 1.38E-46 wgd
Cone17ag1456 Cone-Chr17:9885707 Cone7ag1938 Cone-Chr7:12374215 2.07E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82294 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1456 - - - 0.0