Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1462 ATGTTTTATTTAGCTACTCTTTTCGCCCGGCGAATCTACCACTACCTTCGTGCTTTGTTGAAAAATTTTGAACTTGAACTAGCTATTCTCCGAAGCTTTCCAGTTGAAAGTAGAGAGCGGGAAGGAAAAGGGCTTACTTTAGCTCATATGGCTGGGAGCTGGGATAGGAGTTATGATCCAGGTAGCCAGTCAGAAGAGAGCAATTATTTTGAGAGACTGCGCGTTGAGCCTATTTATGATGCATTTGTCTGCCCTCTAACAAAGCAAGTTATGCATGATCCTGTTACCATAGAAACTGGGCAAACCTTTGAAAAAGAAGCAATTGAAAAGTGGTTTAAGGAATCCGAGGAGAGTGGAAGGAAGCTAATGTGTCCATTAACAAAGAGAGAATTAAAAAGCACGGATCTTAACCCTAGTATTGCATTGAGGAACACCATCGAAGAGTGGACTGCCAGGAATGAAGCTGCTCAGCTTGATATGACTCGTAGGACATTAAATCTAGACAGCACAGAAAGCGACATTATGGTCTCTTTGAAGTATGTTCAATTTGTCAGCCAAAACAACCGATCAAATAAGCATATTGCATGCAATGCTGGGGTGGTACCTATGATTATTGGTCTGTTGAAGAGTACTAGTCGCAAAGTTCGGTGCAGAGCTTTGGAAACACTTCGCATTGTGGTGCAGGAAGATGATGATAATAAGGAAATATTAGCCGAGGGTGACACTGTGCGCACAATAGTAAAGTTCTTGTGGCATGAGCTTTCTAAAGAGCGGGAGGAAGCTGTGTCCTTATTGTATGAGCTCTCCAAATCTGAGGCCTTGTGCAAGAAGATTGGTTCAGTCAATGGATCGATTCTCATATTGGTTGGAATGACTAGTAGTAACTCAGAGAATGTATTGACGGTGGAAAAGGCTGATAAAGTATTAGAGAACCTTGAAAAGTGTGAGAATAATGTGCGACAAATGGCTGAATGTGGTAGGCTGAAGCCTCTTCTATCACTGATCCTCAAAGGTCGACCAGAAACAAAACTGTCCATGGCTGCTTTTCTGGGTGAGTTAGTTTTGAATAACGATGTAAAGGTCCTTGTGGCTAAAACGGTGGGGTCATCTCTGATCAACATCATGAAAAGCGGTAATATGCAGTCAAGAGAAGTTGCTTTGAAAGCCTTAAACCAGATCTCGTCGTTTGAGGCAAGTGCAGAAGTATTGATAGAAGAAGGAATACTCCCCCCACTTGTCAAAGACCTTTTCACTGTGGGTTCCAACCAACTTCCCATGCGACTAAAAGAGGTATCCGCAACAATTCTTGCCAATGTTGTCAACTCGGGCCATGACTTTGATTCCATCCCGGTGGGACCAGACAATCAAACCACTCTGGTTTCAGAGGATATAGTCCATAATCTGCTACATCTCATTAGCAATACTGGTCCTGCAATTGAATGTAAGCTACTCCAGGTCCTTGTTGGGATCACTAATTCTTCTTCTAGCGTTGTCAATGTAGTTGCTGCCATTAAAAGTTCGGGTGCAACTATCAGTTTGGTTCAGTTTATCGAGGCTCCACAGCAGGATCTGCGTGTAGCTTCCATAAGACTCCTCCAGAATCTCTCACCGCACATGGGTCAGGAACTAGCCGACGCTCTACGTGGCACTGTAGGCCAGCTAGGCAGTCTATTTAAGGTCATATCAGAAAATACTGGAATCACAGAAGAGCAGGCTGCTGCTGTTGGTCTCCTAGCCGACCTTCCTGAAAGGGATTTGGGCCTCACTAGGCAAATGCTTGATGATGATGACTTCAAGTTGGTTTACTCTAGAATAGTTAGAATACGGCATGGAGAGACTAGGGGCAGCCGCTTTGTAACTCCATTTCTTGAAGGGCTTGTGCGTATTCTTTCAAGGGTTACTTTTGCCTTGAACGATGAGCCCAATGCTATTGCGTTTTGTCGTGATTACAATCTTGCTGCTTTGTTCATTGAACTTCTTCAATCTAATGGGCTTGACAATGTACAGATGGCTTCTGCTAATGCATTGGAAAACCTGTCCCTAGAAGCCATACACTTGACCAAACTGCCTGAGTTGCCACCGCCTCCTTTTTGTGCTTCAATCTTTCCATGCTTTAGCAAACCGCCTACAATAACTGGATTGTGTAGGCTCCACAGAGGAACTTGTTCCTTGAGAGACAGTTTTTGTCTTCTGGAAGGGCAGGCAGTGGACAAGTTGGTAGCTCTATTGGACCATACAAATGAGAGGGTTGCAGAGGCTGCTCTTTCTGCACTGTCTACTTTGTTGGATGATGCAGTTGATATTGAACAGGGTATACTAGTGTTGTGTGATGCCGAAGGACTTAAGCCTGTACTTGATATTTTAGTCGAAAAACGTACAGAGAATATGTGGAGGAGGGCTGTGTGGACGGTAGAGAGACTTTTGCGGACAGACGGTATTGTATATGAGGTCTCTGGAAACCAAAATGTGAGTACGGCCCTTGTTGATGCGTTTCAGCATGGTGATTACCGAACCCGACAAATTGCTGAACGTGCTCTGAAACATGTCGATAAGTTACCCAATTTTTCTGGGATCTTTCCAAATATGGGGTAG 2592 43.98 MFYLATLFARRIYHYLRALLKNFELELAILRSFPVESREREGKGLTLAHMAGSWDRSYDPGSQSEESNYFERLRVEPIYDAFVCPLTKQVMHDPVTIETGQTFEKEAIEKWFKESEESGRKLMCPLTKRELKSTDLNPSIALRNTIEEWTARNEAAQLDMTRRTLNLDSTESDIMVSLKYVQFVSQNNRSNKHIACNAGVVPMIIGLLKSTSRKVRCRALETLRIVVQEDDDNKEILAEGDTVRTIVKFLWHELSKEREEAVSLLYELSKSEALCKKIGSVNGSILILVGMTSSNSENVLTVEKADKVLENLEKCENNVRQMAECGRLKPLLSLILKGRPETKLSMAAFLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREVALKALNQISSFEASAEVLIEEGILPPLVKDLFTVGSNQLPMRLKEVSATILANVVNSGHDFDSIPVGPDNQTTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGITNSSSSVVNVVAAIKSSGATISLVQFIEAPQQDLRVASIRLLQNLSPHMGQELADALRGTVGQLGSLFKVISENTGITEEQAAAVGLLADLPERDLGLTRQMLDDDDFKLVYSRIVRIRHGETRGSRFVTPFLEGLVRILSRVTFALNDEPNAIAFCRDYNLAALFIELLQSNGLDNVQMASANALENLSLEAIHLTKLPELPPPPFCASIFPCFSKPPTITGLCRLHRGTCSLRDSFCLLEGQAVDKLVALLDHTNERVAEAALSALSTLLDDAVDIEQGILVLCDAEGLKPVLDILVEKRTENMWRRAVWTVERLLRTDGIVYEVSGNQNVSTALVDAFQHGDYRTRQIAERALKHVDKLPNFSGIFPNMG 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9910382 9914282 + Conep17aG0150300.1 Cone17ag1462 456939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1462 863 Pfam U-box domain 80 154 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag1462 863 SUPERFAMILY RING/U-box 70 159 - -
Cone17ag1462 863 ProSiteProfiles U-box domain profile. 77 156 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag1462 863 SMART arm_5 496 537 IPR000225 GO:0005515(InterPro)
Cone17ag1462 863 SMART arm_5 722 763 IPR000225 GO:0005515(InterPro)
Cone17ag1462 863 SMART arm_5 356 395 IPR000225 GO:0005515(InterPro)
Cone17ag1462 863 SMART arm_5 639 681 IPR000225 GO:0005515(InterPro)
Cone17ag1462 863 SMART arm_5 230 270 IPR000225 GO:0005515(InterPro)
Cone17ag1462 863 SMART arm_5 188 228 IPR000225 GO:0005515(InterPro)
Cone17ag1462 863 SMART arm_5 396 441 IPR000225 GO:0005515(InterPro)
Cone17ag1462 863 SMART arm_5 767 809 IPR000225 GO:0005515(InterPro)
Cone17ag1462 863 SMART arm_5 315 355 IPR000225 GO:0005515(InterPro)
Cone17ag1462 863 SUPERFAMILY ARM repeat 428 849 IPR016024 -
Cone17ag1462 863 Gene3D - 622 854 IPR011989 -
Cone17ag1462 863 SUPERFAMILY ARM repeat 168 494 IPR016024 -
Cone17ag1462 863 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 164 IPR013083 -
Cone17ag1462 863 SMART Ubox_2 81 149 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone17ag1462 863 Gene3D - 368 536 IPR011989 -
Cone17ag1462 863 CDD RING-Ubox_PUB 79 136 IPR045210 -
Cone17ag1462 863 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 62 859 IPR052608 -
Cone17ag1462 863 Gene3D - 165 367 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1462 Cone-Chr17:9910382 Cone20ag0014 Cone-Chr20:111676 0 dispersed
Cone17ag1462 Cone-Chr17:9910382 Cone4ag1974 Cone-Chr4:13862254 5.52E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1462 - - - 0.0