Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1467 ATGGCCAGGCGACATGGATGGGAGCTCCCTGCTCACACTTTTCAGGTTGTGGCTATCACTGTCTTTTTCTTGCTATCCATTGCATATTATGCATTTTTCGCACCCTTTCTTGGCAAGGACATCTATGAGTATGTGGCCGTTGGTGTTTATTCTGTCCTGGTACTAGCTGTATTTGTGCTTTATGTTCGATGCACAGCAATTGATCCTGCTGATCCTGGAATTCTGATTGAAGCCGATGCATTCAGACCGCACAATGCCACAGATCAGCCAGGAAATGCATCTTCCATTGAAGAACCCAGTAAAGTAGGATTGAGGAATGGAGTCCAATCTGGTCATGGTAAGAGTTTTTGTTCGAAGGTGGGAGACTTCTTGTGTGGTTTTCTTGTAATAGAGGATTGCCGGAGAGATGAAGATTTGCAGCAACAATCTGGAGAGGAGGAAGCCTTATTCTGCACATTGTGCAATGCTGAGGTACGAAAGTTCAGCAAACACTGTAGAAGTTGCGATAAATGTGTTGATGGATTTGATCACCATTGTCGGTGGTTGAATAATTGTGTGGGGAGGAAGAACTATATCACATTTGTATGCTTAATGGCAGCAAGTCTTGTTTGGCTCACCGTTGAATGTGGAGTTGGTATCGCTGTCCTGGTCAGATGCTTTGTTGATAGAAAGGGTACAGAAAATCAGATAACCGACAAGCTTGGAGTTGGGTTCACACGGCCACCTTTTGCTACTGTTGTAGCCATATGCACAGCTGTCTCTTTCCTGGCCACCATACCTTTAGGAGAACTCTTCTTTTTTCACCTGATTCTGATCCGAAAGGGTATCACAACATATGAGTATGTAGTTGCCATGAGAACACAGAGCGAAGCTCCCGGACCCTCTGTGGATGGAGGCGAACAGCAGAGTCTCCCATCTTCACCAACCAGTTCTGCAGTTACTGCCATAAGTGGGAGAAGCTCTGTTGGAATGAGTTTGCAGTACAAAGGTTCTTGGTGTACCCCTCCTAGAATTTTCATGGATAACCAGGATGAAATAATACCACATTTGGAGGCAGGGCGGCTGCCATCCACTGTGGACCCAGATGCAGTACAGCCACCTGATAAAGGCCAAAAGTTAGCCCAGCGTCCAGTGCGGATCAGCGCCTGGAAGCTTGCAAAACTGGATTCGAATGATGCAATCAAAGCAGGTGCCAAAGCTAGAGCCTCATCTTCAGTGCTTAGGCCCATCAGTTCTAGACACCATCCATACGACACGGATCATTTATCCAGTAGCAATGTGAGTGGAAGAAGCAGTCCGGTGAGTACAATCCATCAAGGGTTTGACAATAAATTTGGTAGAGCTGGACCATCTAGGGCTATGTTATCTCCTTCCAAGAGCTCATATCCTCCCAGTAGAGCTAGCAAGGAAGATATTGAATCATGTCATCACAGTATGAGTAATTTGAGCAGCCCTATTGTTTCCAATATTGCCCCTTCACCATATCAGCAGCTCGTTTCCAACAGAGATCACTTCAACCCTATATATCAATCATCAGCGAATGAGTCTCCTTTATCAGCTAAGAAAAGTGAAGGGAATGCATATGAAGTGGTCGAAAATACAGCAAAAGCTCCTGTAAGGAAGAACGGTGCGGGTGGTGTAGAAAACAAGGTAAGATCTTCAGTGTTCTGGGATCAAGAAGCCGGGCGGTTCATGTCTTCGACATCTAGAGGTTCTGGCACAGAGCTGGTATACACGGCTCAATCTATATTTTATGGTGGTCCTGTGATCAATGAAGAGAGAAACAGAGTGACAAGAAATAGTAATTCATTGGGAGCAGTACATGGGCTAGAGAGAGGGCCGACGTCGAGGTATTATCAGCAGCGGGGGAGAACACAGAGGGGTGGGCAGCTGCCTGTGTTTGTACCCAGTGATTTCAGACAACAAAGTGACTTGCCGCCATGA 1944 46.04 MARRHGWELPAHTFQVVAITVFFLLSIAYYAFFAPFLGKDIYEYVAVGVYSVLVLAVFVLYVRCTAIDPADPGILIEADAFRPHNATDQPGNASSIEEPSKVGLRNGVQSGHGKSFCSKVGDFLCGFLVIEDCRRDEDLQQQSGEEEALFCTLCNAEVRKFSKHCRSCDKCVDGFDHHCRWLNNCVGRKNYITFVCLMAASLVWLTVECGVGIAVLVRCFVDRKGTENQITDKLGVGFTRPPFATVVAICTAVSFLATIPLGELFFFHLILIRKGITTYEYVVAMRTQSEAPGPSVDGGEQQSLPSSPTSSAVTAISGRSSVGMSLQYKGSWCTPPRIFMDNQDEIIPHLEAGRLPSTVDPDAVQPPDKGQKLAQRPVRISAWKLAKLDSNDAIKAGAKARASSSVLRPISSRHHPYDTDHLSSSNVSGRSSPVSTIHQGFDNKFGRAGPSRAMLSPSKSSYPPSRASKEDIESCHHSMSNLSSPIVSNIAPSPYQQLVSNRDHFNPIYQSSANESPLSAKKSEGNAYEVVENTAKAPVRKNGAGGVENKVRSSVFWDQEAGRFMSSTSRGSGTELVYTAQSIFYGGPVINEERNRVTRNSNSLGAVHGLERGPTSRYYQQRGRTQRGGQLPVFVPSDFRQQSDLPP 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9932597 9937276 + Conep17aG0150800.1 Cone17ag1467 456944

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1467 647 MobiDBLite consensus disorder prediction 405 469 - -
Cone17ag1467 647 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 19 389 - GO:0005783(PANTHER)|GO:0005794(PANTHER)|GO:0006612(PANTHER)|GO:0018230(PANTHER)|GO:0019706(PANTHER)
Cone17ag1467 647 ProSiteProfiles DHHC domain profile. 149 199 - -
Cone17ag1467 647 MobiDBLite consensus disorder prediction 290 314 - -
Cone17ag1467 647 MobiDBLite consensus disorder prediction 421 439 - -
Cone17ag1467 647 Pfam DHHC palmitoyltransferase 146 282 IPR001594 GO:0016409(InterPro)
Cone17ag1467 647 MobiDBLite consensus disorder prediction 621 647 - -
Cone17ag1467 647 MobiDBLite consensus disorder prediction 294 314 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1467 K20027 - - vvi:100254706 951.044
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0418 Cone-Chr13:3864295 Cone17ag1467 Cone-Chr17:9932597 1.35E-39 dispersed
Cone17ag1467 Cone-Chr17:9932597 Cone20ag0009 Cone-Chr20:82689 0 dispersed
Cone17ag1467 Cone-Chr17:9932597 Cone6ag0559 Cone-Chr6:2748622 7.06E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g66 . . . . . . . . . . . . . . . . . Bhi04g01218 . . . . . . . . . . . . . . . Cone17ag1467 . . . . Cme03g01333 . . . . . . . . . . . . Cma05g00968 . . . . . . . . . . . . . . . . . . Lsi08g00776 . Chy03g00608 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016654 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7