Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1471 ATGACTCCTCCATTTAGGTTCCTCGGCCAGGTGAACTCCTCCTCTCCGCCGCCACCGGTTTCTTACGACTCAGACTTTGTCATAATTCTCGCAGCTCTTCTCTGCGCCTTAATTTGTGTTCTCGGCCTCCTAGCCGTCGCTCGCTGCGCCTGGATGCGCCACCTCTCCGGGTTGGGTCGAGGAGCTCCCAATGTCTCCGGATTAGGTCGAGGAGCTTCCACCGCCACCATTCGTATTCCAACTCCTCCCCTTCCACCAAACAAGGGCCTCAAGAAGAAGGTCCTTAGGTCTCTCCCTAAGCTCACTTTCTCACAGGAATCCTCAGCAGAGTTCTCAGACTGTGCGATCTGCCTCACAGAGTTCTCCTCCGGCGAAGAATTCCGAGTGTTGCCGCAGTGCGGGCATGGTTTCCACGTGGCCTGCATAGACACGTGGTTGAGGTCGTACTCCTCGTGCCCTTCGTGCCGTCAGATTCTGGTGGTGTCTCGCTGCCAGAAGTGCGGTAGCTTGCCGTCCAGCTCCAGTGGCGGTGGCGATATGGAAGGCAGGCGAAAGGAAAGAGAAGATGATGTGAATGGATTCCTGCCTTAG 591 56.51 MTPPFRFLGQVNSSSPPPPVSYDSDFVIILAALLCALICVLGLLAVARCAWMRHLSGLGRGAPNVSGLGRGASTATIRIPTPPLPPNKGLKKKVLRSLPKLTFSQESSAEFSDCAICLTEFSSGEEFRVLPQCGHGFHVACIDTWLRSYSSCPSCRQILVVSRCQKCGSLPSSSSGGGDMEGRRKEREDDVNGFLP 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9949472 9950380 + Conep17aG0151200.1 Cone17ag1471 456948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1471 196 CDD RING-H2_EL5-like 113 156 - -
Cone17ag1471 196 MobiDBLite consensus disorder prediction 179 196 - -
Cone17ag1471 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 160 IPR013083 -
Cone17ag1471 196 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 176 IPR052788 -
Cone17ag1471 196 MobiDBLite consensus disorder prediction 168 196 - -
Cone17ag1471 196 SUPERFAMILY RING/U-box 94 162 - -
Cone17ag1471 196 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Cone17ag1471 196 SMART ring_2 114 155 IPR001841 -
Cone17ag1471 196 Pfam Ring finger domain 113 156 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1471 Cone-Chr17:9949472 Cone5ag0140 Cone-Chr5:606039 3.30E-24 dispersed
Cone12ag0881 Cone-Chr12:7847918 Cone17ag1471 Cone-Chr17:9949472 1.11E-56 wgd
Cone17ag1471 Cone-Chr17:9949472 Cone20ag0007 Cone-Chr20:67139 1.97E-107 wgd
Cone17ag1471 Cone-Chr17:9949472 Cone4ag2034 Cone-Chr4:14120697 2.56E-24 wgd
Cone17ag1471 Cone-Chr17:9949472 Cone7ag1948 Cone-Chr7:12422298 2.44E-65 wgd
Cone17ag1471 Cone-Chr17:9949472 Cone8ag0912 Cone-Chr8:8839713 1.62E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1471 - - - 0.0