Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1478 ATGTCTGGTTCTGAGACAGGAATTTTGACGAGTAGCGAACCCTACAGCGTGGGTCTTCAGTCAGCGCCGGTCCTACAGAACATGCGCTTGTTTTTCAGTGCAGATGGGACGGCTGTGTATAGGCCTATCACTCCTTCTTCATCGTCCCTTTACCCCTCCGATGCTGGAGTCGCCAGTGAGGTCTCCAGCGACGGGGGTTGTTTAGTGTCCCAGGGGAATATGGGTAGTGAGCCATTGAAGAGGAAGAGAGGAAGACCCAGGAAGTATGGGCCCGATGGCACCATGGCTATGGGTCTGAGTCCTCCTAAGGAAAGCGGTGGGTTTTCTCCTTCAAATTCTCAGGCTGCCGTATCAGGAGGACCAGCGTCACCGACTTCTTTGAAGAAAGCGAGAGGCAGACCACCTGGTTCTGGCAATAAAAAACAACAAAAGGAAGCCTTGGGATCCGCTGGCGTTGGGTTCACTCCACATATCGTTACTGTCAAAGCGGGAGAGGATGTATCCTCAAAAATATTGTCATTGTCACAGAGTGGTAGTAGAGCTGTTTGTGTTTTGTCAGCAAATGGAGCAATCTCTAGCGTGACTCTACAGCAACCTGCCACATCTTGCGGAACTGTGACTTATGAGGGGAGATATGAGATACTGTCACTATGTGGTACATTTCTTGTATCTGAGAATGAGGGCCAGAGGAGCAGAAGTGGGGGTTTGAGCGTGTCCCTGGCTGGCCCAGACGGCCGTATATTAGGTGGTGGGGTGGCTGGTCTTTTAATGGCTGCGTCTCCTGTTCAGGTGGTGGTTGGGAGTTTCATTGCCGGGGCCACACCAAACTGA 831 51.74 MSGSETGILTSSEPYSVGLQSAPVLQNMRLFFSADGTAVYRPITPSSSSLYPSDAGVASEVSSDGGCLVSQGNMGSEPLKRKRGRPRKYGPDGTMAMGLSPPKESGGFSPSNSQAAVSGGPASPTSLKKARGRPPGSGNKKQQKEALGSAGVGFTPHIVTVKAGEDVSSKILSLSQSGSRAVCVLSANGAISSVTLQQPATSCGTVTYEGRYEILSLCGTFLVSENEGQRSRSGGLSVSLAGPDGRILGGGVAGLLMAASPVQVVVGSFIAGATPN 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9974559 9977472 - Conep17aG0151900.1 Cone17ag1478 456955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1478 276 ProSiteProfiles PPC domain profile profile. 150 276 IPR005175 -
Cone17ag1478 276 MobiDBLite consensus disorder prediction 42 149 - -
Cone17ag1478 276 CDD DUF296 155 269 IPR005175 -
Cone17ag1478 276 MobiDBLite consensus disorder prediction 42 56 - -
Cone17ag1478 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 154 270 - -
Cone17ag1478 276 Gene3D - 156 274 - -
Cone17ag1478 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 156 270 IPR005175 -
Cone17ag1478 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 58 272 IPR039605 GO:0003680(InterPro)
Cone17ag1478 276 SMART AT_hook_2 80 92 IPR017956 GO:0003677(InterPro)
Cone17ag1478 276 SMART AT_hook_2 128 140 IPR017956 GO:0003677(InterPro)
Cone17ag1478 276 MobiDBLite consensus disorder prediction 105 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0417 Cone-Chr11:2068492 Cone17ag1478 Cone-Chr17:9974559 1.27E-67 dispersed
Cone17ag1478 Cone-Chr17:9974559 Cone8ag0467 Cone-Chr8:3054867 3.29E-69 dispersed
Cone17ag1478 Cone-Chr17:9974559 Cone18ag1088 Cone-Chr18:7983114 9.48E-71 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1478 - - - 0.0