Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1479 ATGCCGACCAAATCACCTGTCAGAGACTCTTCCTCCTCAGACCACTCCAATGGCAATGAAAATCTTACAAAACAACTCACTCCTTCCGAACCTAGGACTATTCCTATAACCTCTTCAACACCACGTCAATCCGACCCACCGCTCTCCTCTGACACAGTTCTCACCCACCTTCCCAGCTATTCCAGGTGGTTTTCATGGAATCATATTCATGAATGCGAGGTTCGGTTCCTCCCAGAGTTCTTCGATTTTCGGTTGCCTTCCAAAACCCCCAAGTCTTACATGTACTTGAGGAATTCCATTGTCAAGTATTTTAGGACTAATCCTTCTGGGAAGATCACATTCACTGATGTCCGCAAGACCCTTGTCGGAGATGTAGGCTCCATCCGTCGGGTTTTTGATTTTTTGGAGACCTGGGGCCTTATCAATTACTCTCCTTGGGCCCCCAATAAGCCACTTAAGTGGGACGACAAGGAGACCAAGTCTGCTTCTCAGACTGATGAATCTGCAGCTGCTTCTGCTGACTCATCCGCACCAAGTGCAACTAGAGAGGCTGCCAAAAGAGTATGCAGTGGTTGCAAGTCTGTTTGCAGCATTGCCTGCTTTGCTTGTGATAAGTATGACTTGACTCTTTGTGCACGATGCTATGTTCGTGGTAATTATCGTGTTGGTGTCAGTTCTTCAGATTTCCGGCGGGTTGAGATCAATGAAGAGATGAGAACAGATTGGACAGATAAAGAGACATTGCATCTCCTTGAAGCTGTTATGCATTATGGTGATGACTGGAGGAAGATCGCGCAACATGTTGGTGGCAGAAGTGAGAAGGAATGTGTTGCCCATTTTGTCAAGCTTCCTTTTAGGGATCAGTTTTCTGGTTATCCGGAGACTGTGGATATTGGTAACAAAGATAACATGGACTATGGTCATGGTGATAATGAATTGACGCCAAGTAAACAAATTCGACTTACACCTCTTGCTGATGCAAGCAACCCCATAATGGCTCAGGCTGCCTTCTTGTCTGCTGTGGCAGGCGTCAAGGTTGCAGAAGTGGCTGCTCATGCAGCTGTGTCTAAACTGTCTGAGGTTGACTATAATTCAAGTAGGCAATGTGTGGTCTCTGCTGCTGCGAATACTGAAAACAAAGGAGTTGATGATGGATCCATCAGAGACATGACGCCAATTGCAGTGGAACTGGCTTTTGTAGATGCAAATTTGCAGGTTAATGAGGAAGAAGAGATGGATGTGGAGAGAGCAATTTCTGTGATTACTGAAGTGCAGATGAAGGAGATGCAAGAAAAGCTGGAGCACTTTGAGGAGGTAGATTTAAAGATGGAGAAGGAATGGCAACAATTGGAACAGATGAAGAGCATGCTCTTTGTTGATCGACTTTTGATGTAG 1395 45.52 MPTKSPVRDSSSSDHSNGNENLTKQLTPSEPRTIPITSSTPRQSDPPLSSDTVLTHLPSYSRWFSWNHIHECEVRFLPEFFDFRLPSKTPKSYMYLRNSIVKYFRTNPSGKITFTDVRKTLVGDVGSIRRVFDFLETWGLINYSPWAPNKPLKWDDKETKSASQTDESAAASADSSAPSATREAAKRVCSGCKSVCSIACFACDKYDLTLCARCYVRGNYRVGVSSSDFRRVEINEEMRTDWTDKETLHLLEAVMHYGDDWRKIAQHVGGRSEKECVAHFVKLPFRDQFSGYPETVDIGNKDNMDYGHGDNELTPSKQIRLTPLADASNPIMAQAAFLSAVAGVKVAEVAAHAAVSKLSEVDYNSSRQCVVSAAANTENKGVDDGSIRDMTPIAVELAFVDANLQVNEEEEMDVERAISVITEVQMKEMQEKLEHFEEVDLKMEKEWQQLEQMKSMLFVDRLLM 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9978302 9981391 - Conep17aG0152000.1 Cone17ag1479 456956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1479 464 CDD SANT 242 283 IPR001005 -
Cone17ag1479 464 SUPERFAMILY Homeodomain-like 52 155 IPR009057 -
Cone17ag1479 464 FunFam SWI/SNF complex subunit SMARCC2 isoform C 237 288 - -
Cone17ag1479 464 FunFam SWI/SNF complex subunit SMARCC2 isoform c 61 147 - -
Cone17ag1479 464 Pfam SWIRM-associated region 1 407 462 IPR032451 -
Cone17ag1479 464 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 239 288 IPR017930 -
Cone17ag1479 464 Pfam Myb-like DNA-binding domain 239 283 IPR001005 -
Cone17ag1479 464 PANTHER SWI/SNF COMPLEX-RELATED 75 462 - -
Cone17ag1479 464 Gene3D - 61 145 IPR036388 -
Cone17ag1479 464 Gene3D - 238 288 - -
Cone17ag1479 464 ProSiteProfiles Myb-like domain profile. 239 284 IPR001005 -
Cone17ag1479 464 Pfam SWIRM domain 65 143 IPR007526 GO:0005515(InterPro)
Cone17ag1479 464 SUPERFAMILY Homeodomain-like 239 289 IPR009057 -
Cone17ag1479 464 Coils Coil 426 446 - -
Cone17ag1479 464 MobiDBLite consensus disorder prediction 155 177 - -
Cone17ag1479 464 SMART sant 238 286 IPR001005 -
Cone17ag1479 464 ProSiteProfiles SWIRM domain profile. 55 152 IPR007526 GO:0005515(InterPro)
Cone17ag1479 464 MobiDBLite consensus disorder prediction 1 50 - -
Cone17ag1479 464 ProSiteProfiles SANT domain profile. 237 288 IPR017884 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1479 K11649 - - csv:101219016 509.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1479 Cone-Chr17:9978302 Cone19ag0221 Cone-Chr19:1395688 1.77E-32 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g45 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1479 . . . . . . Blo18g00731 . Bda01g01574 Bpe02g01767 . Bma01g00692 . . . . . . . Car09g00017 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009874 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 3 2 1 28