Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone17ag1483 ATGGAGAGAGAACCTGTTCGCCCTTCCGCTCATCTCCAACCTGGAACAGATCACGGAGATCTAATTCACCCTCGCCCGGAAATTACTTGTGAAGTGGAAGACCAAAATAAGGCTAATCGGAAGATTCTACAGATGGTGAAGGAAAGGGAATTCTATGACGTGCTTGGAGTCAGCCCAACGGCTTCAGAGGCGGAGATCAAAAAAGCTTATTACATGAAGGCACGTCAGGTTCATCCTGATAAAAACCCCAATGATCCTCTTGCAGCTCAGAATTTCCAGGTTCTAGGTGAGGCATACCAAGTACTGAGCAATACTGCACAACGGCAAGCGTATGATGCTTATGGAAAATCTGGAATCTCAACTGAAGCAATAATTGATCCTGCAGCAATATTTGCCATGCTTTTTGGGAGTGAGCTCTTTGAAGAATATATAGGCCAGCTTGCCATGGCCTCGATGGCGTCACTTGACATTTTTACTGAGGGGGAACAATTTGATGCTAAAAAGTTGCAGGAGAAGATGAGGGTCGTCCAGAAGGACAGAGAAGACAAGCTTGTGCAAATAATGAAAGATCGTCTCAACCAGTATGTGCAAGGAAACAAAGCAGATTTTGTTAATCATGCTGAAGCTGAAGTAACGAGGCTCTCCAATGCGGCCTATGGTGTTGATATGCTGAATACAATTGGCTACATATATGCCAGACAGGCAGCAAAGGAGCTAGGAAAGAAGGCGATATATTTGGGGGTGCCGTTTATTGCGGAGTGGTTTAGAAACAAGGGACACTTCATAAAATCCCAAGTTACAGCAGCAACAGGTGCCATTGCACTGATTCAGCTGCAGGAGGACATGAAGAGGCAACTTAGTGCAGAAGGAAATTACACCGAAGATGAGCTTGAAGAATACATGCAATCTCACAAGAAGTTGATGACTGATTCCCTTTGGAAGCTTAATGTGGCTGATATTGAGGCAACACTTTCTCGTGTTTGTCAGATGGTTCTTCAAGACAGCAATGTCAAGAAGGAGGAGCTTCATGCACGAGCAAAGGGGCTGAAAACACTCGGTAAAATTTTCCAGAGGGCGAAGCCAATCAATGGGAATGAGGGTGTAACTGGAGTACAGAAATTGAATGGAAGCTCCTCGGACCATGATGCTTCTTTTCGCATTACATCACCAGAATCTACAACTTGTAAAGATCCATCTTATACTGCATTTGCATTTCAGAGCCCCTATGTGGTTGTGGAGGCCCCCAACATTTCAGGTGGACATGGAAGTAACAATTTACCAAGGCCCGTGGCACCTCCTGGTGTGCAAAGACACCCTTCAACAAGCAAGGATTGA 1335 45.09 MEREPVRPSAHLQPGTDHGDLIHPRPEITCEVEDQNKANRKILQMVKEREFYDVLGVSPTASEAEIKKAYYMKARQVHPDKNPNDPLAAQNFQVLGEAYQVLSNTAQRQAYDAYGKSGISTEAIIDPAAIFAMLFGSELFEEYIGQLAMASMASLDIFTEGEQFDAKKLQEKMRVVQKDREDKLVQIMKDRLNQYVQGNKADFVNHAEAEVTRLSNAAYGVDMLNTIGYIYARQAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQVTAATGAIALIQLQEDMKRQLSAEGNYTEDELEEYMQSHKKLMTDSLWKLNVADIEATLSRVCQMVLQDSNVKKEELHARAKGLKTLGKIFQRAKPINGNEGVTGVQKLNGSSSDHDASFRITSPESTTCKDPSYTAFAFQSPYVVVEAPNISGGHGSNNLPRPVAPPGVQRHPSTSKD 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10006195 10011672 + Conep17aG0152400.1 Cone17ag1483 456960

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone17ag1483 444 PRINTS DnaJ domain signature 70 85 IPR001623 -
Cone17ag1483 444 PRINTS DnaJ domain signature 107 126 IPR001623 -
Cone17ag1483 444 PRINTS DnaJ domain signature 52 70 IPR001623 -
Cone17ag1483 444 PRINTS DnaJ domain signature 87 107 IPR001623 -
Cone17ag1483 444 Pfam X-domain of DnaJ-containing 177 365 IPR026894 -
Cone17ag1483 444 CDD DnaJ 50 104 IPR001623 -
Cone17ag1483 444 Pfam DnaJ domain 50 112 IPR001623 -
Cone17ag1483 444 ProSiteProfiles dnaJ domain profile. 50 115 IPR001623 -
Cone17ag1483 444 Gene3D DnaJ domain 34 128 IPR036869 -
Cone17ag1483 444 ProSitePatterns Nt-dnaJ domain signature. 92 111 IPR018253 -
Cone17ag1483 444 MobiDBLite consensus disorder prediction 420 444 - -
Cone17ag1483 444 SMART dnaj_3 49 107 IPR001623 -
Cone17ag1483 444 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 33 375 IPR052423 -
Cone17ag1483 444 FunFam Chaperone protein dnaJ 10 45 127 - -
Cone17ag1483 444 SUPERFAMILY Chaperone J-domain 43 145 IPR036869 -
Cone17ag1483 444 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone17ag1483 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1483 Cone-Chr17:10006195 Cone20ag0410 Cone-Chr20:1988766 1.60E-126 dispersed
Cone17ag1483 Cone-Chr17:10006195 Cone17ag0805 Cone-Chr17:6367797 8.36E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1 . . . . . . Bma04g00311 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 . . . . . Bda11g00988 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g3 Blo01g01664 . . Bda03g00342 Bpe02g00277 Bpe04g00302 Bma04g00311 Bma01g02435 . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1483 . Lsi04g02441 Csa04g02758 . . . . . Bda01g01580 Bpe02g01770 . . . . . . . . . . . . . . . . . . . Cla11g01868 Cam11g1938 Cec11g1964 . Clacu11g2104 Cmu11g1905 Cre11g2313 . . Chy07g00444 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002184 1 3 2 3 3 1 3 1 0 2 1 2 2 1 2 3 0 3 2 1 2 2 2 2 1 3 2 4 2 2 58