Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0006 ATGAAGCTAAATGCCACTCTTTTTTCTGCATTTATCTCCTCATCGGTGTTATTCTGCTTGGTCTTTGCTATTGCTCCTCCTACTGTTAGATCAGCACCTTCCTCTCCCAAACATCTTTTTCGTGGAATTGCCCCAGGAGATGAGGACTATTACAAATCGTCGGACGTGATTCAATGCAAGGACGGATCGAAGAAATTCACGAAAGACCAGCTCAACGATGACTTTTGCGATTGCCCTGATGGCACTGACGAGCCTGGTACATCCGCATGCCCACATGGAAAATTCTACTGTCAAAATGCCGGGCATGTTCCCCTTATCTTGTTTTCTTCCATGGTGAATGATGGCATTTGTGATTGCTGTGATGGAAGTGATGAGTATAACCATCAAGTAAAGTGTGCAAATACATGCTGGGAGGCTGGGAAAGTAGCAAGAGATAAACTGAACAAAAAGATTGCCACATATCAAGAAGGTTCTAAAGTACGGAAACAGGAAGTTGAATACGCAAAGGAAGCTATAGCCAAGGATGAGGCAGAACTACTAAAGTTGAAAAATGAGGAGAAAATACTAAAAGGACTTGTTCAACAGCTTAAAGAACGCAAGGAACAAATAGAAAGGGCTGAAGAGAAGGAGCGTCTACGAAAAGAGAAGGAAGAGAAGGAAAAGAAAGAAGCTGAGGAGAAAGCTAGTATTGGAAAAGGCAAAGCTGAGGAGGACCCTAAGCAAGAGAAAGATGAAAGTGTGAATCATATTGATGGTGAAGACAAGCCCACAAAAGGTGATGTTGATGATAAAAGTAGGCATGGGGCAGGATCTCCTTCAGATCAGGATGTGATAGAGGACCATGTAGATGTTGCAGCAGAAGTTCAACACATTAATACACCTGAAAATCAAGAATCATCTCTTAATGTAGAAGAACAGGGAAAAATTTTACCTGAGACTACAGAAGAATTAACGAGGGAAGAGTTGGGCCGTCTTGTTGCTTCTCGGTGGACAGGGAAAGATACTGGTAAGGAAACAGAGGAAGTGGATTCTTCAAAAGCTGATTATAACAGCCTTAATGGGATCCCAAAGGATTCGGATGATGAGGAAGATGATGGCTATGCATCTGAGACTGATGATGACAGCCAGAAACATGAGGAGGATCTAGAGGATGAAACAGATAGAGATCACAGGGAGGAGGATCTTGATGATTCTAGTTCTTCGTACAGATACGATTCAGACGTTGAATCAGATTTTTCAGATGTGGACATCTCAACTAACCCCTCCTGGTTGGAGAAGATACAACAAACTATGCGAAATGTTCTACAAGCTGTTAACATCTTCCAGGCTCCAGTGAACCAATCAGATGCTGCTTTTGTGCGCAAGGAGTATGATGAATCCAGTGCCAAGCTATCTAAAATACAGGCACGAATATCAAGTTTGACACAAAAGCAAAAGCATGATTTTGGTCCAGAGAAATCATTCTATTCATTCTATGGCCGTTGCTTTGAGAGCAAGCAGAACAAGTATGTTTACAAAGTCTGCCCATATAAACAAGCTTCACAGATTGAGGGCCACTCAACCACCCGTTTGGGGCAGTGGGACAAATTTGAGGACTCATACAGATTCATGATATTTTCAAATGGTGATAGATGCTGGAATGGACCTGATAGAAGTTTGAAGGTCAGGTTAAGATGTGGGCTGAAAAATGAAATTACTGATGTGGATGAACCAAGCCGATGCGAATACGTGGCATTGTTATCTACCCCAGCTGTCTGCCTTGAGGAAATACTTCAGGAGCTGCAACAGAAACTAGACTCGATGAACCAAGAACCACAAAAGCACGATGAGCTTTAG 1836 42.43 MKLNATLFSAFISSSVLFCLVFAIAPPTVRSAPSSPKHLFRGIAPGDEDYYKSSDVIQCKDGSKKFTKDQLNDDFCDCPDGTDEPGTSACPHGKFYCQNAGHVPLILFSSMVNDGICDCCDGSDEYNHQVKCANTCWEAGKVARDKLNKKIATYQEGSKVRKQEVEYAKEAIAKDEAELLKLKNEEKILKGLVQQLKERKEQIERAEEKERLRKEKEEKEKKEAEEKASIGKGKAEEDPKQEKDESVNHIDGEDKPTKGDVDDKSRHGAGSPSDQDVIEDHVDVAAEVQHINTPENQESSLNVEEQGKILPETTEELTREELGRLVASRWTGKDTGKETEEVDSSKADYNSLNGIPKDSDDEEDDGYASETDDDSQKHEEDLEDETDRDHREEDLDDSSSSYRYDSDVESDFSDVDISTNPSWLEKIQQTMRNVLQAVNIFQAPVNQSDAAFVRKEYDESSAKLSKIQARISSLTQKQKHDFGPEKSFYSFYGRCFESKQNKYVYKVCPYKQASQIEGHSTTRLGQWDKFEDSYRFMIFSNGDRCWNGPDRSLKVRLRCGLKNEITDVDEPSRCEYVALLSTPAVCLEEILQELQQKLDSMNQEPQKHDEL 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 41376 47527 + Conep18aG0000600.1 Cone18ag0006 456967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0006 611 ProSiteProfiles MRH domain profile. 493 588 IPR044865 -
Cone18ag0006 611 SUPERFAMILY LDL receptor-like module 88 128 IPR036055 GO:0005515(InterPro)
Cone18ag0006 611 MobiDBLite consensus disorder prediction 392 410 - -
Cone18ag0006 611 MobiDBLite consensus disorder prediction 290 307 - -
Cone18ag0006 611 MobiDBLite consensus disorder prediction 309 345 - -
Cone18ag0006 611 MobiDBLite consensus disorder prediction 204 412 - -
Cone18ag0006 611 Pfam Glucosidase II beta subunit-like protein 454 601 IPR036607 -
Cone18ag0006 611 Coils Coil 457 477 - -
Cone18ag0006 611 MobiDBLite consensus disorder prediction 204 286 - -
Cone18ag0006 611 Coils Coil 584 604 - -
Cone18ag0006 611 Coils Coil 165 234 - -
Cone18ag0006 611 PANTHER N-LINKED OLIGOSACCHARIDE PROCESSING 20 596 IPR039794 GO:0006491(PANTHER)|GO:0017177(PANTHER)
Cone18ag0006 611 MobiDBLite consensus disorder prediction 371 385 - -
Cone18ag0006 611 Pfam Glucosidase II beta subunit-like 35 173 IPR028146 -
Cone18ag0006 611 Gene3D - 488 586 IPR009011 -
Cone18ag0006 611 Gene3D - 86 137 IPR036055 GO:0005515(InterPro)
Cone18ag0006 611 SUPERFAMILY Mannose 6-phosphate receptor domain 496 586 IPR009011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1585 Cone-Chr11:10995446 Cone18ag0006 Cone-Chr18:41376 0 dispersed
Cone18ag0006 Cone-Chr18:41376 Cone8ag1415 Cone-Chr8:11071169 9.70E-20 dispersed
Cone18ag0006 Cone-Chr18:41376 Cone12ag1359 Cone-Chr12:10120371 4.31E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0006 K08288 - mdm:103414660 709.909