Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0035 ATGGCGGCTGTTACTTTCTCAGATCTACACACCGAAGCGGGCATCAAGTCTCTCGATGCTTTTCTTCCCGGAAAATCTTATATCTCCGGGAATCATCTTACTAAAGATGACATTAAGGTGTATGCGGCTGTGCTGGAGAGGCCTTCTGATTCCTTTCCAAACGCTAGCAAGTGGTACGACGCTGTTTCTTCAACTCTCGCTCCAAACTTTCCTGGAAAAGCTGCTGGAGTTAGAATAAGTGGCAAAGTCCCTCCCCATGCGGCTGCTCCGCCCAAGGAAGCTGAGAAGGATTCTCCTGCCGGAGATGATGATGATGACCTGGATCTCTTCGGCGATGAGACAGAAGATGACAAGAAAGCAGCAGAAGAGAGGGAGGCAGCTAAGAAGGCATCATCCAAGAAGAAAGAAAGTGGGAAATCTTCTGTTCTTCTTGATGTGAAGCCATGGGATGATGAAACCGACATGAAGAAGCTGGAAGAGGCTGTCCGCAGTGTCGAGATTCCTGGTCTCTTCTGGGGAGCATCAAAACTTGTTCCGGTTGGATATGGGATAAAGAAGCTGCAGATCATGCTTACAATTGTTGATGATCTCGTGTCCGTGGATTCCCTTATAGAGGAAAGGCTCACGGTGGAGCCCTGCAATGAGTATGTCCAGAGCTGTGACATTGTTGCTTTTAACAAGATCTAA 687 47.89 MAAVTFSDLHTEAGIKSLDAFLPGKSYISGNHLTKDDIKVYAAVLERPSDSFPNASKWYDAVSSTLAPNFPGKAAGVRISGKVPPHAAAPPKEAEKDSPAGDDDDDLDLFGDETEDDKKAAEEREAAKKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEIPGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEERLTVEPCNEYVQSCDIVAFNKI 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 215631 217535 - Conep18aG0003500.1 Cone18ag0035 456996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0035 228 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 103 111 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cone18ag0035 228 FunFam Elongation factor 1-beta 1 like 133 228 - -
Cone18ag0035 228 Pfam EF-1 guanine nucleotide exchange domain 141 228 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cone18ag0035 228 CDD EF1B 142 228 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
Cone18ag0035 228 MobiDBLite consensus disorder prediction 77 134 - -
Cone18ag0035 228 SUPERFAMILY GST C-terminal domain-like 12 66 IPR036282 -
Cone18ag0035 228 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 4 228 IPR049720 GO:0003746(InterPro)|GO:0005085(PANTHER)|GO:0005829(PANTHER)|GO:0005853(InterPro)|GO:0006414(PANTHER)
Cone18ag0035 228 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 217 228 IPR001326 GO:0003746(InterPro)|GO:0006414(InterPro)
Cone18ag0035 228 Gene3D - 132 228 IPR014717 -
Cone18ag0035 228 SUPERFAMILY eEF-1beta-like 136 228 IPR036219 -
Cone18ag0035 228 MobiDBLite consensus disorder prediction 113 134 - -
Cone18ag0035 228 SMART EF1_GNE_2 139 228 IPR014038 GO:0003746(InterPro)|GO:0006414(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0021 Cone-Chr16:150691 Cone18ag0035 Cone-Chr18:215631 8.44E-65 dispersed
Cone11ag1561 Cone-Chr11:10857070 Cone18ag0035 Cone-Chr18:215631 1.08E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0035 K03232 - cit:102619566 318.161