Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0042 ATGACAGCTCTTCAAACTGAACCCGAAGCCACAGTGGAGGATGATTATTCTGATGAAGAGATTGATGTTGATGAGCTTGAGAGAAGGATGTGGAGGGACAAGATGCGTCTCAAACGGCTCAAAGAACAGAACAAGGGCAAGGAAGGGATTGAAATAGCAAAGCAGAGGCAGTCCCAGGAACAAGCAAGGAGGAAGAAGATGTCAAGGGCGCAAGATGGAATCTTAAAGTACATGTTAAAGATGATGGAAGTTTGTAAAGCTCAAGGTTTCGTTTACGGTATCATTCCAGAGAAGGGAAAGCCTGTAACTGGTGCATCCGATAATCTCCGTGAATGGTGGAAAGATAAAGTTAGGTTTGACCGAAACGGCCCAGCTGCCATTGCCAAGTACCAAGCGGAGAATGCAATCCCGGGAAAAAGCGATGGCTGTAATTCGATCGGTCCAACCCCACATACCTTGCAAGAACTTCAAGATACCACTCTTGGTTCACTTTTGTCATCTCTAATGCAACATTGTGATCCTCCGCAGAGGAGGTTTCCATTGGAGAAAGGTGTTCCTCCACCATGGTGGCCTTCTGGAAATGAGGACTGGTGGCCTCAGCTGGGTTTGCCAAAGGATCACGGTCCTCCACCTTACAAGAAACCTCACGACTTAAAGAAAGCATGGAAAGTAGGTGTTCTTACAGCAGTTATCAAACACATGTCCCCTGATATTTCCAAGATCCGCAAGCTTGTTAGGCAGTCCAAGTGTCTGCAGGATAAAATGACGGCCAAGGAAAGTGCCACCTGGCTTGCCGTTATCAACCAAGAGGAGGCCTTAGCCCGAGAGCTTTACCCCGACTGTTGTCCCCCTTTATCATCAGGTGGAGGTAGTGGTTCCTTGGTAATTAATGATTGCAGTGAATATGATGTAGAAGGTACTGAAGAAGAGCCAATCTTTGATGTACAAGAATGCAAACCCGAGAATCTTAGTCCGTTCAATTTGGGGATGGACAGAATGAGAGAAAGGGTACAGGTTCGACAGCCATCTTTTCCAGTGAAGGGTGAAGTTGTTGCAAACTTGGACTTTATGAGGAAGAGAAAGCCATCCAGTGATCTAAACATGATGATGGATCAAAAGATATATACTTGTGAGTTTGTTCAGTGTCCTTATAGTGAAGTCCATCTTGGCTTCCATGATAGAACTTCAAGGGACAATCATCAACTGACTTGCCCATACAGAAGTTCTTCGGATTTCGGAAGCTCAAAATTTCAATTTAACGAGGTTAAACCCATTATCTTCCCTCAATCCTTTGTCCAAACCAAGGCATCAGCTGCAGCCCAATCTGTTAACTCTGTTCCACCCCCACCACTAACTTCCTTCGACTTATCTGGACTAGGAGTTCCAGAAGATGGGCAGAAGCTAATCAGTGAGCTCATGTCCATTTACGAGACTAATCAGGGCAACAAGAACGTAAATCCTGGCAATAGTTCAGTCACTACAGTGAATCAAAATCTCTCTCACCCGAAAATCCAACACCAACAAGAGGAATACTTCCATGGTCAATGTGTGATGGTGGAGGGAAATATGTTTGAAGAGTCTAATGTTTCTACTAACCATCAACCATTTTCAAGGGAGGAAGTTCAATTTGACAGGTTTAGGTCTCTGAATTCTCCTTTCGAGACAAACCCCAGCAACAATAATTTTCATATGATGTTTGGGTCTCCATTTGATCTCTCATTGCTTGATTACAAAGAGGAAGTACAAGGATTGGCAATTGAAACGCTGCCAAAGCAACAGGACATTCCAATCTGGTACCAGTAA 1803 44.32 MTALQTEPEATVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQNKGKEGIEIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQAENAIPGKSDGCNSIGPTPHTLQELQDTTLGSLLSSLMQHCDPPQRRFPLEKGVPPPWWPSGNEDWWPQLGLPKDHGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDISKIRKLVRQSKCLQDKMTAKESATWLAVINQEEALARELYPDCCPPLSSGGGSGSLVINDCSEYDVEGTEEEPIFDVQECKPENLSPFNLGMDRMRERVQVRQPSFPVKGEVVANLDFMRKRKPSSDLNMMMDQKIYTCEFVQCPYSEVHLGFHDRTSRDNHQLTCPYRSSSDFGSSKFQFNEVKPIIFPQSFVQTKASAAAQSVNSVPPPPLTSFDLSGLGVPEDGQKLISELMSIYETNQGNKNVNPGNSSVTTVNQNLSHPKIQHQQEEYFHGQCVMVEGNMFEESNVSTNHQPFSREEVQFDRFRSLNSPFETNPSNNNFHMMFGSPFDLSLLDYKEEVQGLAIETLPKQQDIPIWYQ 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 261362 264690 + Conep18aG0004200.1 Cone18ag0042 457003

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0042 600 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 5 573 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0042 600 Pfam Ethylene insensitive 3, DNA-binding domain 24 271 IPR047091 GO:0003700(InterPro)
Cone18ag0042 600 Gene3D - 148 281 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0042 600 Gene3D - 56 134 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0042 600 MobiDBLite consensus disorder prediction 43 67 - -
Cone18ag0042 600 FunFam Ethylene insensitive 3-like 1 56 134 - -
Cone18ag0042 600 Coils Coil 9 43 - -
Cone18ag0042 600 SUPERFAMILY DNA-binding domain of EIN3-like 150 274 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0042 600 FunFam Ethylene insensitive 3-like 1 144 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0042 K14514 - - csv:101206055 955.281
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0042 Cone-Chr18:261362 Cone5ag0446 Cone-Chr5:1893514 7.58E-223 dispersed
Cone11ag1551 Cone-Chr11:10818602 Cone18ag0042 Cone-Chr18:261362 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone11ag1551 . 1 623 EIL Transcription Factor Family AT2G27050 58.2 4.7e-190 661.8
Cone18ag0042 . 5 599 EIL Transcription Factor Family AT2G27050 59.9 1.1e-189 660.6
Cone5ag0446 . 7 512 EIL Transcription Factor Family AT2G27050 59.2 4.9e-155 545.4
Cone1ag1457 . 7 505 EIL Transcription Factor Family AT2G27050 58.2 6.2e-150 528.5
Cone11ag0985 . 5 490 EIL Transcription Factor Family AT2G27050 55.1 1.5e-135 480.7
Cone18ag0594 . 5 490 EIL Transcription Factor Family AT2G27050 54.9 5.7e-135 478.8
Cone11ag1473 . 75 330 EIL Transcription Factor Family AT2G27050 66.0 1.3e-91 334.7
Cone18ag0117 . 76 330 EIL Transcription Factor Family AT2G27050 64.5 3.3e-90 330.1
Cone18ag0117 . 79 327 EIL Transcription Factor Family AT5G21120 50.4 6.1e-72 269.2
Cone11ag1473 . 79 327 EIL Transcription Factor Family AT5G21120 51.2 1.0e-71 268.5
Cone11ag1473 . 74 551 EIL Transcription Factor Family AT1G73730 56.0 1.0e-133 474.6
Cone18ag0117 . 78 559 EIL Transcription Factor Family AT1G73730 56.0 2.8e-131 466.5
Cone18ag0042 . 13 309 EIL Transcription Factor Family AT1G73730 64.2 1.3e-107 387.9
Cone11ag1551 . 37 333 EIL Transcription Factor Family AT1G73730 63.3 2.4e-106 383.6
Cone1ag1457 . 39 329 EIL Transcription Factor Family AT1G73730 62.8 7.1e-103 372.1
Cone5ag0446 . 41 332 EIL Transcription Factor Family AT1G73730 61.5 1.6e-102 370.9
Cone11ag0985 . 47 348 EIL Transcription Factor Family AT1G73730 60.5 1.2e-94 344.7
Cone18ag0594 . 47 315 EIL Transcription Factor Family AT1G73730 63.9 3.7e-91 333.2
Cone11ag1551 . 2 623 EIL Transcription Factor Family AT3G20770 60.1 2.5e-205 712.6
Cone18ag0042 . 5 599 EIL Transcription Factor Family AT3G20770 61.8 1.4e-203 706.8
Cone5ag0446 . 6 512 EIL Transcription Factor Family AT3G20770 59.2 9.7e-157 551.2
Cone1ag1457 . 6 536 EIL Transcription Factor Family AT3G20770 55.7 1.2e-154 544.3
Cone11ag0985 . 7 520 EIL Transcription Factor Family AT3G20770 51.1 2.4e-131 466.8
Cone18ag0594 . 7 525 EIL Transcription Factor Family AT3G20770 51.5 1.2e-130 464.5
Cone11ag1473 . 75 330 EIL Transcription Factor Family AT3G20770 67.3 5.2e-94 342.8
Cone18ag0117 . 76 330 EIL Transcription Factor Family AT3G20770 66.8 2.9e-92 337.0
Cone18ag0117 . 84 299 EIL Transcription Factor Family AT5G65100 58.8 5.5e-71 266.2
Cone11ag1473 . 84 299 EIL Transcription Factor Family AT5G65100 58.8 7.2e-71 265.8
Cone5ag0446 . 33 297 EIL Transcription Factor Family AT5G10120 58.5 7.4e-85 312.0
Cone1ag1457 . 33 297 EIL Transcription Factor Family AT5G10120 57.8 1.6e-84 310.8
Cone11ag1551 . 31 297 EIL Transcription Factor Family AT5G10120 56.7 1.1e-83 308.1
Cone11ag1473 . 78 291 EIL Transcription Factor Family AT5G10120 59.8 1.9e-72 270.8
Cone18ag0117 . 78 289 EIL Transcription Factor Family AT5G10120 59.4 2.1e-71 267.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45128 PF00742 Homoserine_dh 2.20E-45 CL0139 Cone TF