Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0042 ATGACAGCTCTTCAAACTGAACCCGAAGCCACAGTGGAGGATGATTATTCTGATGAAGAGATTGATGTTGATGAGCTTGAGAGAAGGATGTGGAGGGACAAGATGCGTCTCAAACGGCTCAAAGAACAGAACAAGGGCAAGGAAGGGATTGAAATAGCAAAGCAGAGGCAGTCCCAGGAACAAGCAAGGAGGAAGAAGATGTCAAGGGCGCAAGATGGAATCTTAAAGTACATGTTAAAGATGATGGAAGTTTGTAAAGCTCAAGGTTTCGTTTACGGTATCATTCCAGAGAAGGGAAAGCCTGTAACTGGTGCATCCGATAATCTCCGTGAATGGTGGAAAGATAAAGTTAGGTTTGACCGAAACGGCCCAGCTGCCATTGCCAAGTACCAAGCGGAGAATGCAATCCCGGGAAAAAGCGATGGCTGTAATTCGATCGGTCCAACCCCACATACCTTGCAAGAACTTCAAGATACCACTCTTGGTTCACTTTTGTCATCTCTAATGCAACATTGTGATCCTCCGCAGAGGAGGTTTCCATTGGAGAAAGGTGTTCCTCCACCATGGTGGCCTTCTGGAAATGAGGACTGGTGGCCTCAGCTGGGTTTGCCAAAGGATCACGGTCCTCCACCTTACAAGAAACCTCACGACTTAAAGAAAGCATGGAAAGTAGGTGTTCTTACAGCAGTTATCAAACACATGTCCCCTGATATTTCCAAGATCCGCAAGCTTGTTAGGCAGTCCAAGTGTCTGCAGGATAAAATGACGGCCAAGGAAAGTGCCACCTGGCTTGCCGTTATCAACCAAGAGGAGGCCTTAGCCCGAGAGCTTTACCCCGACTGTTGTCCCCCTTTATCATCAGGTGGAGGTAGTGGTTCCTTGGTAATTAATGATTGCAGTGAATATGATGTAGAAGGTACTGAAGAAGAGCCAATCTTTGATGTACAAGAATGCAAACCCGAGAATCTTAGTCCGTTCAATTTGGGGATGGACAGAATGAGAGAAAGGGTACAGGTTCGACAGCCATCTTTTCCAGTGAAGGGTGAAGTTGTTGCAAACTTGGACTTTATGAGGAAGAGAAAGCCATCCAGTGATCTAAACATGATGATGGATCAAAAGATATATACTTGTGAGTTTGTTCAGTGTCCTTATAGTGAAGTCCATCTTGGCTTCCATGATAGAACTTCAAGGGACAATCATCAACTGACTTGCCCATACAGAAGTTCTTCGGATTTCGGAAGCTCAAAATTTCAATTTAACGAGGTTAAACCCATTATCTTCCCTCAATCCTTTGTCCAAACCAAGGCATCAGCTGCAGCCCAATCTGTTAACTCTGTTCCACCCCCACCACTAACTTCCTTCGACTTATCTGGACTAGGAGTTCCAGAAGATGGGCAGAAGCTAATCAGTGAGCTCATGTCCATTTACGAGACTAATCAGGGCAACAAGAACGTAAATCCTGGCAATAGTTCAGTCACTACAGTGAATCAAAATCTCTCTCACCCGAAAATCCAACACCAACAAGAGGAATACTTCCATGGTCAATGTGTGATGGTGGAGGGAAATATGTTTGAAGAGTCTAATGTTTCTACTAACCATCAACCATTTTCAAGGGAGGAAGTTCAATTTGACAGGTTTAGGTCTCTGAATTCTCCTTTCGAGACAAACCCCAGCAACAATAATTTTCATATGATGTTTGGGTCTCCATTTGATCTCTCATTGCTTGATTACAAAGAGGAAGTACAAGGATTGGCAATTGAAACGCTGCCAAAGCAACAGGACATTCCAATCTGGTACCAGTAA 1803 44.32 MTALQTEPEATVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQNKGKEGIEIAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQAENAIPGKSDGCNSIGPTPHTLQELQDTTLGSLLSSLMQHCDPPQRRFPLEKGVPPPWWPSGNEDWWPQLGLPKDHGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDISKIRKLVRQSKCLQDKMTAKESATWLAVINQEEALARELYPDCCPPLSSGGGSGSLVINDCSEYDVEGTEEEPIFDVQECKPENLSPFNLGMDRMRERVQVRQPSFPVKGEVVANLDFMRKRKPSSDLNMMMDQKIYTCEFVQCPYSEVHLGFHDRTSRDNHQLTCPYRSSSDFGSSKFQFNEVKPIIFPQSFVQTKASAAAQSVNSVPPPPLTSFDLSGLGVPEDGQKLISELMSIYETNQGNKNVNPGNSSVTTVNQNLSHPKIQHQQEEYFHGQCVMVEGNMFEESNVSTNHQPFSREEVQFDRFRSLNSPFETNPSNNNFHMMFGSPFDLSLLDYKEEVQGLAIETLPKQQDIPIWYQ 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 261362 264690 + Conep18aG0004200.1 Cone18ag0042 457003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0042 600 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 5 573 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0042 600 Pfam Ethylene insensitive 3, DNA-binding domain 24 271 IPR047091 GO:0003700(InterPro)
Cone18ag0042 600 Gene3D - 148 281 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0042 600 Gene3D - 56 134 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0042 600 MobiDBLite consensus disorder prediction 43 67 - -
Cone18ag0042 600 FunFam Ethylene insensitive 3-like 1 56 134 - -
Cone18ag0042 600 Coils Coil 9 43 - -
Cone18ag0042 600 SUPERFAMILY DNA-binding domain of EIN3-like 150 274 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cone18ag0042 600 FunFam Ethylene insensitive 3-like 1 144 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0042 Cone-Chr18:261362 Cone5ag0446 Cone-Chr5:1893514 7.58E-223 dispersed
Cone11ag1551 Cone-Chr11:10818602 Cone18ag0042 Cone-Chr18:261362 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45128 PF00742 Homoserine_dh 2.20E-45 CL0139 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0042 K14514 - csv:101206055 955.281