Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0079 ATGTTTCAAGACGAAGGCTCTTCCTCTGTTACTTCCTCCCCACTAGAATTCTTCTCCATGATGACCACCCTTTCTCCCACTCTAGGCTCGCCCCATCCATGGCGGAGAGAGCTCCGATCCGAAGACAGAGGTCTCTACCTCATTAAATTCTTACTCGCTTGCACAACTCACATTTCCGCAAACAACCTCGAAAATGCAAACTTCTTTCTAGAAGAAATCTCCCACCTCGCCTCTCCAGACGGGGACACGATGCAGAGGATCGCTGCCTACTTTGCCGAGGCACTTGCGGACCGGATCCTCAAAACCTGGAAGGGCATACACAAGGCCCTAAACTCTACCAGAATATCTCTGGTCTCTGAAGAGATTTATGTCCGGAAACTGTTTTTCGAGATATTCCCTTTCCTTAAGGTGGCTTATGTGCTCGCTAATCAATCTATTATAGAAGCCATGGAAGGGGAGAATCATATTCATATAATTGATCTTAATGCATCGGAGCCGGCTCAATGGATCGCCCTTCTAGAAGCTTTTAGTGCTCGCCCGGAAGGTTCACCTAATCTGAGAATCACAGGAGTTCATAGAAACAAAGAGGTGTTAGACCAAATTGGTCATATTTTAACCAAAAAGGCCGAGCAGTTAGATTATTCCTTTCAGTTCAAATCGGTTGTTACCAACTTGGAGAATCTTGATGTCGAAAAGCTTGGTGTGAAATCCGGGGAAGCTCTAGCTATCAGCTCTGTTCTACAGATGCATACCCTTTTGGGTTATGAAGATGAATCACCATTACTTTTACGAAAAATGTCAAAGGGTTCATGTCCAAGTGGCCTAGCAGTAAATTTTCCAATGGGACTTAACAAAAGAACATTGGGTGAGTTTCAAAGTCCTAGTCCGGACTCCACCACTTCAGCATCGCCTTCTTTTGGAAAGATCGATAGCTTTCTTAACGCCTTATGGGGTTTATCCCCAAAGGTGATGATAATAACGGAGCAAGATTCAAATCATAATGGATCGAGTCTAATGGACAGATTGTCAGAAGCTCTGTTCTTCTATGCAGCCATGTTTGACGGGTTGGAGTCTACTATGTCTAGGACTTCATTGGAGAGATTAAAGGTGGAGAAGATGTTGTTAGGGGAGGAGATTAAGAATATTATAGCTTGTGAAGGAGGTGAGAGGAAAGAAAGACATGAGAAGTTTGAGAAGTGGATTAGACGCCTTGATTCATCCGGGTTTGGAAATGTTGGGTTGAGTTACTATGGGATGTTGCAAGCGCATAGGTTGTTACAAGGTTATGGTTGTGATGGGTATAAGATTAGGGAAGATAATGGTGGGGTCCTTCTATGCTGGCAAGATCGGCCATTGTTTTCAGTTTCGGCTTGGAGATGTAGGAAGTTAGGGTAG 1395 44.16 MFQDEGSSSVTSSPLEFFSMMTTLSPTLGSPHPWRRELRSEDRGLYLIKFLLACTTHISANNLENANFFLEEISHLASPDGDTMQRIAAYFAEALADRILKTWKGIHKALNSTRISLVSEEIYVRKLFFEIFPFLKVAYVLANQSIIEAMEGENHIHIIDLNASEPAQWIALLEAFSARPEGSPNLRITGVHRNKEVLDQIGHILTKKAEQLDYSFQFKSVVTNLENLDVEKLGVKSGEALAISSVLQMHTLLGYEDESPLLLRKMSKGSCPSGLAVNFPMGLNKRTLGEFQSPSPDSTTSASPSFGKIDSFLNALWGLSPKVMIITEQDSNHNGSSLMDRLSEALFFYAAMFDGLESTMSRTSLERLKVEKMLLGEEIKNIIACEGGERKERHEKFEKWIRRLDSSGFGNVGLSYYGMLQAHRLLQGYGCDGYKIREDNGGVLLCWQDRPLFSVSAWRCRKLG 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 421427 423607 + Conep18aG0008000.1 Cone18ag0079 457040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0079 464 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 458 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone18ag0079 464 Pfam GRAS domain family 48 459 IPR005202 -
Cone18ag0079 464 ProSiteProfiles GRAS family profile. 38 459 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0079 Cone-Chr18:421427 Cone5ag0474 Cone-Chr5:2001375 6.47E-188 dispersed
Cone11ag1515 Cone-Chr11:10668604 Cone18ag0079 Cone-Chr18:421427 1.93e-316 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45130 PF00069 Pkinase 1.40E-73 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0079 - - - 0.0