Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0101 ATGCAGTCAAAGTCTGAAACCACAAAGCGAGTAGAACCCGATCAAGTCAACATCTTACCAAACAGTATTTACTGTGAACCTTGGTGGCGTAGCAGCATTGGTTATAATCCTTATCCCCCACCTGCACGTGGAGGAAATGGTTCCAATTCAACTTCGCCTGAATGCCCAAATGCGGGTTCAGAGTCAAATGCAGGTCAATCTATGTCGAATGATAATGTGAACGAGGAAGATGGTGATTCAAATAAAGATTCGCCGACTAACAGATCCCCCAGATCTAGAAATCATGGGCAAGATACCCAACAGCATGTTGCATCCACTGGGCAAACTATGCATGCGGAATGTATGACACAACCTCCACAGCTTGAACTTATCGGTCACTCTATTGCTTGTGCTTCGAATCCATACCAGGATCCATATTATGGAGGAATGATGACTGCTTATGGACCTCACCTCATGTATCCTCCTATTCTTGGGATGCCTCATGCCAGAATGCCTTTGCCTCTTGAGATGGCACAAGAGCCTGTTTTTGTGAACGCCAAACAATACCAAGGGATTCTGAGACGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAAGAAGCTGATAAAAGTTAGAAAGCCATATCTTCATGAGTCCCGCCACCAGCATGCTATGAGAAGGGTGAGAGGCAGTGGAGGACGTTTTGTCAAGATAAACGAAACCGAGGCGGGGTCCTCTGCTAAAGATAAGAGCACAAGGTCTGGTCAGGCTCCCTCATCACAGTCTGCATGCTCATCTGGTTCCGAGCCTTTGCCTGCTGACTCAGGCGACACTTGGAACTCTAACAGCCAGCAAGGAGCGAGTCAGTCTCAAGAATATGTGACTCGTGGTGGAACCTACCAGAATCACAGTGGTTTGCAGGCCTCGATGTACAATTCTTGTTCTGGTGAGAGAGGGGAGGAAGGAGACTCTTCGACTCAGCAACATGGAAGAGTTTCTACGCACCATACTTCACAGAGGCGGCTTGCCATCCAGTGA 1017 47.79 MQSKSETTKRVEPDQVNILPNSIYCEPWWRSSIGYNPYPPPARGGNGSNSTSPECPNAGSESNAGQSMSNDNVNEEDGDSNKDSPTNRSPRSRNHGQDTQQHVASTGQTMHAECMTQPPQLELIGHSIACASNPYQDPYYGGMMTAYGPHLMYPPILGMPHARMPLPLEMAQEPVFVNAKQYQGILRRRQARAKAEVEKKLIKVRKPYLHESRHQHAMRRVRGSGGRFVKINETEAGSSAKDKSTRSGQAPSSQSACSSGSEPLPADSGDTWNSNSQQGASQSQEYVTRGGTYQNHSGLQASMYNSCSGERGEEGDSSTQQHGRVSTHHTSQRRLAIQ 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 528266 531309 - Conep18aG0010200.1 Cone18ag0101 457062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0101 338 MobiDBLite consensus disorder prediction 43 74 - -
Cone18ag0101 338 Gene3D - 171 233 - -
Cone18ag0101 338 MobiDBLite consensus disorder prediction 34 111 - -
Cone18ag0101 338 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0101 338 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0101 338 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cone18ag0101 338 MobiDBLite consensus disorder prediction 75 89 - -
Cone18ag0101 338 MobiDBLite consensus disorder prediction 90 111 - -
Cone18ag0101 338 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 17 286 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone18ag0101 338 MobiDBLite consensus disorder prediction 208 223 - -
Cone18ag0101 338 SMART cbf3 170 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0101 338 MobiDBLite consensus disorder prediction 241 338 - -
Cone18ag0101 338 MobiDBLite consensus disorder prediction 1 22 - -
Cone18ag0101 338 MobiDBLite consensus disorder prediction 208 338 - -
Cone18ag0101 338 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0101 338 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0101 Cone-Chr18:528266 Cone5ag1448 Cone-Chr5:9392913 5.57E-97 dispersed
Cone1ag0452 Cone-Chr1:4115485 Cone18ag0101 Cone-Chr18:528266 3.36E-49 wgd
Cone11ag1494 Cone-Chr11:10560424 Cone18ag0101 Cone-Chr18:528266 1.84E-204 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45132 PF05996 Fe_bilin_red 7.90E-55 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0101 K08064 - mdm:103407545 393.66