Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0105 ATGGCCTCCTTCGCGCTCACCACCTCCTACCTTCCTTCGCTTCGATCTCGCTCTCAGAAGCCGGCGCCGAATACACACGCTCGCTTCTCTCCTCGAGGGAAGGTCTCCGAAATCTCCGTTCTCCAAAGCGGATTTGGAACTGGAACTCCTATTACTCAATCTCCTTTGAACAGTTCTGAGTTAGCTGGATCAGTTAACGGTTTCAGTGCAACTCGTAGAAATCTCAGTTTTGGCACGATTCGAGCTGCTGCAGCTGCTTCGTCTTCTCCTGCGCCGGTAGCTCCGGCACCTCAGCCATGGCAAGGAGCAGCGATCAAGCCACTACTTGCGTCTATTGCGACAGGGGTTATTCTATGGTTTGTTCCTGTACCAGCTGGAGTGACTAGAAATGCATGGCAATTGCTGGCGATTTTCCTCGCTACAATCGTCGGGATCATTACTCAGCCTTTACCGCTTGGTGCTGTGGCCTTGATGGGGCTCGGAGCCTCCGTCCTCACGAAAACCCTAACTTTTTCAGCTGCTTTCTCTGCCTTTGGAGATCCGATCCCGTGGCTCATCGCTCTTGCCTTCTTCTTCGCCCGAGGCTTTATCAAGACTGGTCTTGGTAACAGAATTGCTTATCAATTTGTCTCTTTGTTTGGTAGCTCGTCGTTAGGATTAGGATACAGTTTGGTGTTCAGTGAGGCCTTGTTGGCTCCAGCGATTCCATCAGTGTCGGCAAGAGCTGGAGGGATCTTCCTTCCTCTTGTGAAATCACTCTGCGTTGCATGCGGTAGCAATGTTGGTGACGGAACAGAGGATAGGCTTGGGTCGTGGTTGATGCTTACTTGCTTTCAAACTTCGGTGATTTCATCTGCAATGTTCTTGACCGCTATGGCGGCAAATCCTTTGAGTGCAAATTTAACGTTTAATACAATTAAGCAGACAATTGGCTGGACGGATTGGGCTAAGGCAGCCATTGTGCCTGGTCTGGTGTCATTAATCGTGGTGCCGTTGATTTTGTATGTGATTTATCCGCCTACAGTGAAGAGCAGCCCAGACGCACCCAAGCTGGCTAGGGAGAAGTTGGCAAAGATGGGGCCAATGAACAAGAATGAGATAATAATGGCTGGGACTCTTCTCCTAACGGTGGGACTCTGGATTTTTGGTGGGGCGATCAATGTGGATGCTGTTACTGCTGCAATTTTGGGACTATCTGTCCTTCTTGTGTCAGGGGTCGTGACCTGGAAGGAGTGTTTGGGTGAAGCAGTTGCCTGGGACACCCTAACATGGTTTGCTGCTCTAATTGCAATGGCTGGGTATCTCAACAAATACGGCCTCATCACCTGGTTCAGTCAAACTGTTGTCAAGTTTGTTGGTGGACTGGGACTCTCATGGCAGGCTTCTTTTGGAATTCTAGCCCTTCTCTATTTCTACTCTCACTACTTCTTCGCAAGTGGGGCCGCACACATTGGAGCCATGTTCACAGCCTTCTTGTCAGTTGCTAGCGCATTAGGTACCCCACCATATTTTGCAGCCATGGTTCTTTCCTTCCTCTCCAACCTCATGGGTGGTCTGACCCACTACGGCATAGGGTCAGCCCCTGTCTTCTACGGTGCAAACTATGTCCCCCTCAGTAAATGGTGGGGCTATGGATTCGTTATCTCCATTGTCAATTTGATTATTTGGCTCGGTGTTGGAAGTGTCTGGTGGAAGGCAATTGGATTGTGGTGA 1713 49.91 MASFALTTSYLPSLRSRSQKPAPNTHARFSPRGKVSEISVLQSGFGTGTPITQSPLNSSELAGSVNGFSATRRNLSFGTIRAAAAASSSPAPVAPAPQPWQGAAIKPLLASIATGVILWFVPVPAGVTRNAWQLLAIFLATIVGIITQPLPLGAVALMGLGASVLTKTLTFSAAFSAFGDPIPWLIALAFFFARGFIKTGLGNRIAYQFVSLFGSSSLGLGYSLVFSEALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTEDRLGSWLMLTCFQTSVISSAMFLTAMAANPLSANLTFNTIKQTIGWTDWAKAAIVPGLVSLIVVPLILYVIYPPTVKSSPDAPKLAREKLAKMGPMNKNEIIMAGTLLLTVGLWIFGGAINVDAVTAAILGLSVLLVSGVVTWKECLGEAVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQASFGILALLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPYFAAMVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLSKWWGYGFVISIVNLIIWLGVGSVWWKAIGLW 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 543277 546897 - Conep18aG0010600.1 Cone18ag0105 457066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0105 570 CDD ArsB_NhaD_permease 142 564 - -
Cone18ag0105 570 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 63 570 IPR030676 GO:0005215(PANTHER)
Cone18ag0105 570 Pfam Sodium:sulfate symporter transmembrane region 106 570 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cone18ag0105 570 NCBIfam DASS family sodium-coupled anion symporter 122 564 IPR001898 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0946 Cone-Chr10:4987307 Cone18ag0105 Cone-Chr18:543277 4.20E-159 dispersed
Cone18ag0105 Cone-Chr18:543277 Cone3ag1088 Cone-Chr3:29508565 4.06E-162 dispersed
Cone11ag1489 Cone-Chr11:10543330 Cone18ag0105 Cone-Chr18:543277 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0105 - - - 0.0