Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0111 ATGGATCCACTATCTTCTCCGGAGCTGGACCTGAACAATCTCAGAGCTCTGAAAATCCTCGGCAAAGGAGCTATGGGAACAGTCTTCCTCGTCCACGACCGGGCGGCTGACCCCTCTGCCCGCTCCCCCTTCGCCATTAAAGTCATCGACAAGGACTCCTTCCATACTAGACTCGACGCTGAACGTCGAGCTCGCTGGGAAATTCAGGTCCTGGCCCGACTTTCCGTTCCAAAACCGCATCCATTCCTCCCCTCCCTTCTGGGTACGTTCGAATCCGATGACCTCTTAGGCTGGGCCGTTCCTTACTGTCCTGGCGGCGATCTCAACGTTCTCCGTTACCGCCAGACCGACCGCGTTTACTCCCCGGCGGTCATTAGGTTCTATCTAGCTCAGCTCGTCTGCGCTCTCGACCACCTTCATACCATGGGCATCGCTTACCGCGACTTAAAGCCTGAAAACGTTTTGATTCAACAATCCGGTCACGTGACACTCACTGACTTCGACCTTTCCCGTAATTTAACCCCTAAATCCGCCACGGTCGCTATATCCGACGAAGAAACCCCGCCGCCGGAGATTCCTCGAGGACACAAGCGAAACCTGACTCGGTGGATATCAACCGTCGGTTCAGAGAAGAACAACAAAAAGAGCTTGAAGAAGGCGAATTCGGCACGAGTCAGCCCGGTGAGTCGCCGGAAAACGAGTTTCTCCAACGGCGAACGGTCCTTCTCATTCGTCGGAACAGAGGAGTACGTCTCGCCGGAAGTCGTGCGCGGCGACGGGCACGAATTCGCCGTCGATTGGTGGGCCATGGGAGTTTTAACGTACGAGATGCTGTATGGAACGACGCCGTTCAAAGGTAAAAATCGGAAGGAAACGTTTCGAAACGTTTTGTTAAAGGCGCCAGAGTTCGTTGGGCAACGCACCTCTTTAACGGATTTGATCGGACGGTTACTAGAAAAGGACCCCACAAGAAGATTAGGATATCTTAGAGGCGCGAACGAGATCAAGGAACACGATTTCTTCAGGGGTGTAAAGTGGGACCGACTAACGGAAGTCTTACGCCCACCCTTTATTCCGTCAATGGAAGAGGAGGATTCGACGGAGAAATTGACCTCCGGTGGGATTGACATTGAAGTTTACTTCCAGCGCTTGAGATCACCGCCGTCAATTCCTCCTTCTCCGACAGCCGAAGGAGAGAGGAACGTGTGGGTGACAGAATTCTGA 1224 53.43 MDPLSSPELDLNNLRALKILGKGAMGTVFLVHDRAADPSARSPFAIKVIDKDSFHTRLDAERRARWEIQVLARLSVPKPHPFLPSLLGTFESDDLLGWAVPYCPGGDLNVLRYRQTDRVYSPAVIRFYLAQLVCALDHLHTMGIAYRDLKPENVLIQQSGHVTLTDFDLSRNLTPKSATVAISDEETPPPEIPRGHKRNLTRWISTVGSEKNNKKSLKKANSARVSPVSRRKTSFSNGERSFSFVGTEEYVSPEVVRGDGHEFAVDWWAMGVLTYEMLYGTTPFKGKNRKETFRNVLLKAPEFVGQRTSLTDLIGRLLEKDPTRRLGYLRGANEIKEHDFFRGVKWDRLTEVLRPPFIPSMEEEDSTEKLTSGGIDIEVYFQRLRSPPSIPPSPTAEGERNVWVTEF 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 581489 582712 + Conep18aG0011200.1 Cone18ag0111 457072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0111 407 ProSiteProfiles AGC-kinase C-terminal domain profile. 342 407 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0111 407 MobiDBLite consensus disorder prediction 209 235 - -
Cone18ag0111 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0111 407 MobiDBLite consensus disorder prediction 219 235 - -
Cone18ag0111 407 SUPERFAMILY Protein kinase-like (PK-like) 11 391 IPR011009 -
Cone18ag0111 407 Pfam Protein kinase domain 236 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0111 407 Pfam Protein kinase domain 17 192 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0111 407 Gene3D Phosphorylase Kinase; domain 1 361 370 - -
Cone18ag0111 407 Gene3D Transferase(Phosphotransferase) domain 1 107 192 - -
Cone18ag0111 407 SMART serkin_6 14 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0111 407 FunFam Serine/threonine-protein kinase UCNL 14 106 - -
Cone18ag0111 407 FunFam Serine/threonine-protein kinase OXI1 239 360 - -
Cone18ag0111 407 Gene3D Phosphorylase Kinase; domain 1 14 106 - -
Cone18ag0111 407 Gene3D Transferase(Phosphotransferase) domain 1 236 360 - -
Cone18ag0111 407 ProSitePatterns Protein kinases ATP-binding region signature. 20 47 IPR017441 GO:0005524(InterPro)
Cone18ag0111 407 PANTHER FLIPPASE KINASE 1-RELATED 8 365 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone18ag0111 407 ProSiteProfiles Protein kinase domain profile. 14 341 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0111 407 FunFam Serine/threonine-protein kinase OXI1 107 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0111 Cone-Chr18:581489 Cone3ag0616 Cone-Chr3:3050306 1.03E-96 dispersed
Cone11ag1483 Cone-Chr11:10511741 Cone18ag0111 Cone-Chr18:581489 2.24E-281 wgd
Cone14ag0992 Cone-Chr14:8212095 Cone18ag0111 Cone-Chr18:581489 5.54E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82301 PF13519 VWA_2 7.10E-13 CL0128 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0111 - - - 0.0