Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0157 ATGTTCACCATTGTTACCGTTAGATGTGGGCATTGTACCAATTTGCTCTCTGTCAACATGGCTACTTCTCTAGTTCCCAGTTCTTCCCAAGACCATAACCAGTACACCCAGAAACAACAGGTCAGTATAACAAGCACCGATCATGATGATCGCGATTCGATTTATAAGGAGATGAGTGGATCGTCTTCTAAATGCAACAAGTTGGGATCAGGCTTGGATCAGTATGTAGAGCATGATCAACAACAACCTAGAACCCCTCCTATCCCACCACCAGAGAAAAGACAACGGGTTCCTTCTGCATATAACAGGTTTATTAAAGAGGAAATTCAAAGGATTAAAGCTAGGAATCCAGAAATAAGCCACAGAGAAGCCTTTAGCACTGCTGCCAAAAATTGGGCACATTTTCCTCACATTCACTTCGGGCTAAAACTGGCTGATGGAAATCAGCAACCTACTTGA 459 42.92 MFTIVTVRCGHCTNLLSVNMATSLVPSSSQDHNQYTQKQQVSITSTDHDDRDSIYKEMSGSSSKCNKLGSGLDQYVEHDQQQPRTPPIPPPEKRQRVPSAYNRFIKEEIQRIKARNPEISHREAFSTAAKNWAHFPHIHFGLKLADGNQQPT 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 828939 830784 + Conep18aG0016000.1 Cone18ag0157 457118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0157 152 CDD HMG-box_SF 96 132 - -
Cone18ag0157 152 MobiDBLite consensus disorder prediction 58 81 - -
Cone18ag0157 152 MobiDBLite consensus disorder prediction 27 43 - -
Cone18ag0157 152 FunFam axial regulator YABBY 5-like 80 138 - -
Cone18ag0157 152 Pfam YABBY protein 1 142 IPR006780 GO:0007275(InterPro)
Cone18ag0157 152 SUPERFAMILY HMG-box 85 135 IPR036910 -
Cone18ag0157 152 PANTHER PROTEIN YABBY 6-RELATED 1 149 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cone18ag0157 152 MobiDBLite consensus disorder prediction 27 97 - -
Cone18ag0157 152 Gene3D High mobility group box domain 77 137 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0157 Cone-Chr18:828939 Cone6ag0698 Cone-Chr6:3531312 4.03E-37 dispersed
Cone1ag0390 Cone-Chr1:3399838 Cone18ag0157 Cone-Chr18:828939 1.09E-19 wgd
Cone11ag1432 Cone-Chr11:10218346 Cone18ag0157 Cone-Chr18:828939 6.85E-91 wgd
Cone18ag0157 Cone-Chr18:828939 Cone5ag1310 Cone-Chr5:7541587 1.92E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45135 PF00201 UDPGT 4.20E-20 CL0113 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0157 K25796 - csv:101222154 173.711