Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0157 ATGTTCACCATTGTTACCGTTAGATGTGGGCATTGTACCAATTTGCTCTCTGTCAACATGGCTACTTCTCTAGTTCCCAGTTCTTCCCAAGACCATAACCAGTACACCCAGAAACAACAGGTCAGTATAACAAGCACCGATCATGATGATCGCGATTCGATTTATAAGGAGATGAGTGGATCGTCTTCTAAATGCAACAAGTTGGGATCAGGCTTGGATCAGTATGTAGAGCATGATCAACAACAACCTAGAACCCCTCCTATCCCACCACCAGAGAAAAGACAACGGGTTCCTTCTGCATATAACAGGTTTATTAAAGAGGAAATTCAAAGGATTAAAGCTAGGAATCCAGAAATAAGCCACAGAGAAGCCTTTAGCACTGCTGCCAAAAATTGGGCACATTTTCCTCACATTCACTTCGGGCTAAAACTGGCTGATGGAAATCAGCAACCTACTTGA 459 42.92 MFTIVTVRCGHCTNLLSVNMATSLVPSSSQDHNQYTQKQQVSITSTDHDDRDSIYKEMSGSSSKCNKLGSGLDQYVEHDQQQPRTPPIPPPEKRQRVPSAYNRFIKEEIQRIKARNPEISHREAFSTAAKNWAHFPHIHFGLKLADGNQQPT 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 828939 830784 + Conep18aG0016000.1 Cone18ag0157 457118

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0157 152 CDD HMG-box_SF 96 132 - -
Cone18ag0157 152 MobiDBLite consensus disorder prediction 58 81 - -
Cone18ag0157 152 MobiDBLite consensus disorder prediction 27 43 - -
Cone18ag0157 152 FunFam axial regulator YABBY 5-like 80 138 - -
Cone18ag0157 152 Pfam YABBY protein 1 142 IPR006780 GO:0007275(InterPro)
Cone18ag0157 152 SUPERFAMILY HMG-box 85 135 IPR036910 -
Cone18ag0157 152 PANTHER PROTEIN YABBY 6-RELATED 1 149 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cone18ag0157 152 MobiDBLite consensus disorder prediction 27 97 - -
Cone18ag0157 152 Gene3D High mobility group box domain 77 137 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0157 K25796 - - csv:101222154 173.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0157 Cone-Chr18:828939 Cone6ag0698 Cone-Chr6:3531312 4.03E-37 dispersed
Cone1ag0390 Cone-Chr1:3399838 Cone18ag0157 Cone-Chr18:828939 1.09E-19 wgd
Cone11ag1432 Cone-Chr11:10218346 Cone18ag0157 Cone-Chr18:828939 6.85E-91 wgd
Cone18ag0157 Cone-Chr18:828939 Cone5ag1310 Cone-Chr5:7541587 1.92E-32 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone13ag0895 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 66.9 1.9e-49 193.0
Cone19ag0892 . 1 155 C2C2-YABBY Transcription Factor Family AT1G69180 58.2 1.1e-41 167.2
Cone9ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 54.9 3.9e-41 165.2
Cone12ag0372 . 66 230 C2C2-YABBY Transcription Factor Family AT2G45190 57.2 6.7e-41 164.5
Cone8ag0386 . 69 233 C2C2-YABBY Transcription Factor Family AT2G45190 57.5 7.4e-40 161.0
Cone6ag0698 . 69 236 C2C2-YABBY Transcription Factor Family AT2G45190 53.5 4.8e-39 158.3
Cone11ag1432 . 5 178 C2C2-YABBY Transcription Factor Family AT1G08465 60.0 4.0e-50 195.3
Cone12ag0372 . 23 205 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 3.0e-42 169.1
Cone6ag0698 . 26 218 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 3.4e-41 165.6
Cone8ag0386 . 26 202 C2C2-YABBY Transcription Factor Family AT1G08465 53.7 4.4e-41 165.2
Cone4ag0666 . 11 175 C2C2-YABBY Transcription Factor Family AT1G08465 54.5 9.8e-41 164.1
Cone18ag0157 . 1 150 C2C2-YABBY Transcription Factor Family AT1G08465 60.7 9.8e-41 164.1
Cone9ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.8 2.8e-52 202.6
Cone6ag0698 . 36 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.5 8.2e-52 201.1
Cone8ag0386 . 36 232 C2C2-YABBY Transcription Factor Family AT4G00180 51.7 1.1e-45 180.6
Cone12ag0372 . 33 229 C2C2-YABBY Transcription Factor Family AT4G00180 52.4 2.2e-44 176.4
Cone4ag0666 . 11 176 C2C2-YABBY Transcription Factor Family AT2G26580 72.5 5.3e-62 234.6
Cone11ag1432 . 4 177 C2C2-YABBY Transcription Factor Family AT2G26580 54.6 4.9e-44 174.9
Cone6ag0698 . 26 200 C2C2-YABBY Transcription Factor Family AT2G26580 50.8 1.3e-41 166.8
Cone9ag0698 . 26 208 C2C2-YABBY Transcription Factor Family AT2G26580 50.3 1.8e-41 166.4
Cone8ag0386 . 26 198 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.9e-40 162.9
Cone12ag0372 . 23 193 C2C2-YABBY Transcription Factor Family AT2G26580 52.0 1.5e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45135 PF00201 UDPGT 4.20E-20 CL0113 Cone TF