Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0170 ATGGAAGATAAAGTTGATGTTCCATCTCATTTCCTATGTCCAATCTCTCTACAGCTCATGAGAGATCCCGTTACAATCTCAACCGGTATATCTTACGATCGAGAATGCATCGAGAAATGGTTATTTTCATGCAGGAATCAGATATGTCCCGTGACAAAACAACCCTTGTTAGATAATTTAGATCTAACACCGAATCACACTCTACGTCGATTAATTCAATCATGGTGCATTCTGAATCCATCATCCCGTATCGAAAGAATCCCAACTCCGAAACTGCCGACCGACGGAACCCAGATTGTCAGGATTCTCAATGAAGCAAAGAAGTGTCCGAACTCAACCGTCAAGTGTCTTCAAACACTTAGATCTATTGTTCTAGAAAGTGAGAGAAGTAGAAGCTTCTTAGAATCGTCCGGAGGGGTAGAGTTCTTGGCTTCAGTCGTGAAGAATTATCGTGATCATGATGGTGATCCGACAGTCCTAGAAACCGCCGTTGAAGTTCTTTTCAACCTTCAATCTTCAGAAAACCGTCTCATGAGTGTCCTCAACAATGAAGAAAATGAGATTATAGAGTCATTAACGCAAGTATTGAAGATTGGAAGCTATCAATCTAGAGCACATGCAATAATGGTATTGAAGTCTATTTTCCAAGTAGCTGATCCAATTCAATTAATCAATGTCAAAAACCAATTTTTTATTGAGTTAGTAAGAGTGTTGAAAGATCAAATTTCTCATAAAGCATCGAAGGCTTCATTGAAGCTTTTAGCAGAGCTTTGTCCATGGGGAAGGAGCAGGATCAAAGCGGTTGAAGCCGATGCTGTTTTTGTGTTGATTGAGATTCTCTTAAACTCGTCCGAAAGGAGGGTTTGTGAACTTAGCCTTGTGGTTTTGGATCTGCTTTGTGGGTGTGCAGAAGGGAGAGCTGTGTTCTTGGAGCATGGTGGTGGGATTGCAATTGTGAGCAAGAAGATCTTTCGGGTTTCACATTTGGCTAGTGATAGATCTGTGAGGATTTTCTGTTCGATTTCTCGGTTTTGTGCAAGTTCTAGGGTTCTTCAAGAGATGTTGCAAGTTGGTGTTGTGTCAAAGTTGTGTTTGGTGATGCAAGTGGATTGCAGCTTGAAGATGAAGGAAAGGGCAAAAGAGATTTTGAAATTGCATTCTAGGGTTTGGAAGTATTCTACTTGTATTCCTTCTCATTTGTTGTCTTCTTACCCATCTTGTTGA 1224 40.6 MEDKVDVPSHFLCPISLQLMRDPVTISTGISYDRECIEKWLFSCRNQICPVTKQPLLDNLDLTPNHTLRRLIQSWCILNPSSRIERIPTPKLPTDGTQIVRILNEAKKCPNSTVKCLQTLRSIVLESERSRSFLESSGGVEFLASVVKNYRDHDGDPTVLETAVEVLFNLQSSENRLMSVLNNEENEIIESLTQVLKIGSYQSRAHAIMVLKSIFQVADPIQLINVKNQFFIELVRVLKDQISHKASKASLKLLAELCPWGRSRIKAVEADAVFVLIEILLNSSERRVCELSLVVLDLLCGCAEGRAVFLEHGGGIAIVSKKIFRVSHLASDRSVRIFCSISRFCASSRVLQEMLQVGVVSKLCLVMQVDCSLKMKERAKEILKLHSRVWKYSTCIPSHLLSSYPSC 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 886262 887485 + Conep18aG0017300.1 Cone18ag0170 457131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0170 407 Gene3D - 92 387 IPR011989 -
Cone18ag0170 407 PANTHER WDSAM1 PROTEIN 4 403 IPR045185 GO:0061630(InterPro)
Cone18ag0170 407 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone18ag0170 407 CDD RING-Ubox_PUB 8 58 IPR045210 -
Cone18ag0170 407 Pfam U-box domain 7 76 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone18ag0170 407 SUPERFAMILY ARM repeat 109 383 IPR016024 -
Cone18ag0170 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Cone18ag0170 407 SUPERFAMILY RING/U-box 4 84 - -
Cone18ag0170 407 SMART Ubox_2 10 75 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0469 Cone-Chr13:5129164 Cone18ag0170 Cone-Chr18:886262 1.35E-128 dispersed
Cone18ag0170 Cone-Chr18:886262 Cone19ag0427 Cone-Chr19:3532185 2.81E-133 dispersed
Cone1ag0559 Cone-Chr1:5661593 Cone18ag0170 Cone-Chr18:886262 9.39E-77 wgd
Cone10ag0123 Cone-Chr10:628654 Cone18ag0170 Cone-Chr18:886262 2.73E-167 wgd
Cone11ag1421 Cone-Chr11:10164764 Cone18ag0170 Cone-Chr18:886262 2.07E-264 wgd
Cone13ag1136 Cone-Chr13:9000613 Cone18ag0170 Cone-Chr18:886262 1.62E-13 wgd
Cone18ag0170 Cone-Chr18:886262 Cone19ag1117 Cone-Chr19:8027342 1.13E-14 wgd
Cone18ag0170 Cone-Chr18:886262 Cone3ag0136 Cone-Chr3:756341 1.75E-165 wgd
Cone18ag0170 Cone-Chr18:886262 Cone5ag1317 Cone-Chr5:7662685 8.11E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0170 - - - 0.0