Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0170 | ATGGAAGATAAAGTTGATGTTCCATCTCATTTCCTATGTCCAATCTCTCTACAGCTCATGAGAGATCCCGTTACAATCTCAACCGGTATATCTTACGATCGAGAATGCATCGAGAAATGGTTATTTTCATGCAGGAATCAGATATGTCCCGTGACAAAACAACCCTTGTTAGATAATTTAGATCTAACACCGAATCACACTCTACGTCGATTAATTCAATCATGGTGCATTCTGAATCCATCATCCCGTATCGAAAGAATCCCAACTCCGAAACTGCCGACCGACGGAACCCAGATTGTCAGGATTCTCAATGAAGCAAAGAAGTGTCCGAACTCAACCGTCAAGTGTCTTCAAACACTTAGATCTATTGTTCTAGAAAGTGAGAGAAGTAGAAGCTTCTTAGAATCGTCCGGAGGGGTAGAGTTCTTGGCTTCAGTCGTGAAGAATTATCGTGATCATGATGGTGATCCGACAGTCCTAGAAACCGCCGTTGAAGTTCTTTTCAACCTTCAATCTTCAGAAAACCGTCTCATGAGTGTCCTCAACAATGAAGAAAATGAGATTATAGAGTCATTAACGCAAGTATTGAAGATTGGAAGCTATCAATCTAGAGCACATGCAATAATGGTATTGAAGTCTATTTTCCAAGTAGCTGATCCAATTCAATTAATCAATGTCAAAAACCAATTTTTTATTGAGTTAGTAAGAGTGTTGAAAGATCAAATTTCTCATAAAGCATCGAAGGCTTCATTGAAGCTTTTAGCAGAGCTTTGTCCATGGGGAAGGAGCAGGATCAAAGCGGTTGAAGCCGATGCTGTTTTTGTGTTGATTGAGATTCTCTTAAACTCGTCCGAAAGGAGGGTTTGTGAACTTAGCCTTGTGGTTTTGGATCTGCTTTGTGGGTGTGCAGAAGGGAGAGCTGTGTTCTTGGAGCATGGTGGTGGGATTGCAATTGTGAGCAAGAAGATCTTTCGGGTTTCACATTTGGCTAGTGATAGATCTGTGAGGATTTTCTGTTCGATTTCTCGGTTTTGTGCAAGTTCTAGGGTTCTTCAAGAGATGTTGCAAGTTGGTGTTGTGTCAAAGTTGTGTTTGGTGATGCAAGTGGATTGCAGCTTGAAGATGAAGGAAAGGGCAAAAGAGATTTTGAAATTGCATTCTAGGGTTTGGAAGTATTCTACTTGTATTCCTTCTCATTTGTTGTCTTCTTACCCATCTTGTTGA | 1224 | 40.6 | MEDKVDVPSHFLCPISLQLMRDPVTISTGISYDRECIEKWLFSCRNQICPVTKQPLLDNLDLTPNHTLRRLIQSWCILNPSSRIERIPTPKLPTDGTQIVRILNEAKKCPNSTVKCLQTLRSIVLESERSRSFLESSGGVEFLASVVKNYRDHDGDPTVLETAVEVLFNLQSSENRLMSVLNNEENEIIESLTQVLKIGSYQSRAHAIMVLKSIFQVADPIQLINVKNQFFIELVRVLKDQISHKASKASLKLLAELCPWGRSRIKAVEADAVFVLIEILLNSSERRVCELSLVVLDLLCGCAEGRAVFLEHGGGIAIVSKKIFRVSHLASDRSVRIFCSISRFCASSRVLQEMLQVGVVSKLCLVMQVDCSLKMKERAKEILKLHSRVWKYSTCIPSHLLSSYPSC | 407 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 886262 | 887485 | + | Conep18aG0017300.1 | Cone18ag0170 | 457131 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0170 | 407 | Gene3D | - | 92 | 387 | IPR011989 | - | |
Cone18ag0170 | 407 | PANTHER | WDSAM1 PROTEIN | 4 | 403 | IPR045185 | GO:0061630(InterPro) | |
Cone18ag0170 | 407 | ProSiteProfiles | U-box domain profile. | 6 | 82 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone18ag0170 | 407 | CDD | RING-Ubox_PUB | 8 | 58 | IPR045210 | - | |
Cone18ag0170 | 407 | Pfam | U-box domain | 7 | 76 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone18ag0170 | 407 | SUPERFAMILY | ARM repeat | 109 | 383 | IPR016024 | - | |
Cone18ag0170 | 407 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 86 | IPR013083 | - | |
Cone18ag0170 | 407 | SUPERFAMILY | RING/U-box | 4 | 84 | - | - | |
Cone18ag0170 | 407 | SMART | Ubox_2 | 10 | 75 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0469 | Cone-Chr13:5129164 | Cone18ag0170 | Cone-Chr18:886262 | 1.35E-128 | dispersed | |
Cone18ag0170 | Cone-Chr18:886262 | Cone19ag0427 | Cone-Chr19:3532185 | 2.81E-133 | dispersed | |
Cone1ag0559 | Cone-Chr1:5661593 | Cone18ag0170 | Cone-Chr18:886262 | 9.39E-77 | wgd | |
Cone10ag0123 | Cone-Chr10:628654 | Cone18ag0170 | Cone-Chr18:886262 | 2.73E-167 | wgd | |
Cone11ag1421 | Cone-Chr11:10164764 | Cone18ag0170 | Cone-Chr18:886262 | 2.07E-264 | wgd | |
Cone13ag1136 | Cone-Chr13:9000613 | Cone18ag0170 | Cone-Chr18:886262 | 1.62E-13 | wgd | |
Cone18ag0170 | Cone-Chr18:886262 | Cone19ag1117 | Cone-Chr19:8027342 | 1.13E-14 | wgd | |
Cone18ag0170 | Cone-Chr18:886262 | Cone3ag0136 | Cone-Chr3:756341 | 1.75E-165 | wgd | |
Cone18ag0170 | Cone-Chr18:886262 | Cone5ag1317 | Cone-Chr5:7662685 | 8.11E-157 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0170 | - | - | - | 0.0 |