Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0202 ATGGCGAATCGTCATGGAGTTGAAGAGAGAGCAGCAGGTCTATCAGAATCATCAAAACCAGTCAGCTCCATTAATCATCATCATCATCCTCATCCTCATCATCTACCAGCTTACGCTCTTCTCCATCACGGTCTTTCTCATAGTAATATTAATCATTCTTCAAATAACTTCATTTCGAGTGGTCAAGAAGGATCAGCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCAATTGTTCTTCAAGGAGTTCATAATAACAAGAATAATCTTGGAAATGATGATCATCATCATAATACTTATCAACCCAAAGCACCTTTTTACACAACAAAACCGTCTGCTACTCTGGAAATGTTCCCTTCATGGCCAATTAGATCATTTCAACAAACTCCAAGGGGAAGCTCAAAATCAGGTGGGGGTGAAAGCACCGATTCAGGATCAGCTGTGAACAATCTTACTACAAGCAAAGCAGCAGCAGCTGCTATGGCCCACTTATTAGAAGAAGACCCTGAATCTCCAATTAGCAATAATCATAGAGACATATTATCATACTCTAACTCAGATCATCATCATCATCACGATCAGAGATTTGGTCAGAAGATACAGCCTGAGATCATGACCAGAGATGATCATGATAATCAATCTACTTCCAAATCACTACAAGATCAAAAGACACTCAGACGATTAGCTCAAAACAGAGAAGCAGCAAAGAAGAGCCGCCTTAGAAAAAAGGCTTATGTACAGCAGCTAGAATCAAGTAGACTTAAGCTCACTCAGCTAGAACAAGACCTCCAACGTGCTCGCTCGCAGGGGTTAATTTTTGGTGCTGCCGGAGGCAATATCAGTTCCGGGGCAGCAATATTTGATATGGAGTATGCGAGATGGCTCGAAGATGACCACCGTCACATGGCGGAGCTAAGATCAGGCCTACAAGTGCATTTAACAGATGCCGATCTTCGAGTTATCATCGATGGTTATATCTCTCACTACGACGAAATCTTCCAATTAAAAGGGGTAGCTGCTAAATCCGACGTCTTCCATCTAATCACCGGAATGTGGATTTCTCCGGCCGAGCGCTGCTTCCTTTGGATGGGTGGTTTCCGCCCTTCTGACCTCATCAAGATGCTGAAAACACAGTTAGACCCGTTGACGGAACAACAGATGATGGGGATATATAAGCTACAACAATCATCTCAACAGGCAGAAGATGCTCTTTCTCAGGGGCTCGAGCAGCTCCACCAATCGCTTGTCGATACCATTGCGGCGAGCCCGCTTATCGACGGAATGAACCAGATGGCTCTTGCTATAGGCAAGCTATCCAATCTGGAAGGCTTTGTTCGTCAGGCTGATATTTTGAGACAACAAACCCTACACCAATTACGGCGAATACTGACCGTCCGGCAAGCTGCGAGATGCTATCTCGTTATCGGAGAGTACTACAACCGGTTACGAGCCCTTAGCTCTCTATGGGCCTCTAGACCTCGAGAGAGCTTAATGAACAATATCGGAAACTCGTGCCAAACGACGCCGGAGCTACAGATGATTATTCAACCTTCACATAATCAATTCTCTAGCTTCTGA 1575 44.38 MANRHGVEERAAGLSESSKPVSSINHHHHPHPHHLPAYALLHHGLSHSNINHSSNNFISSGQEGSAAFDFGELEEAIVLQGVHNNKNNLGNDDHHHNTYQPKAPFYTTKPSATLEMFPSWPIRSFQQTPRGSSKSGGGESTDSGSAVNNLTTSKAAAAAMAHLLEEDPESPISNNHRDILSYSNSDHHHHHDQRFGQKIQPEIMTRDDHDNQSTSKSLQDQKTLRRLAQNREAAKKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGLIFGAAGGNISSGAAIFDMEYARWLEDDHRHMAELRSGLQVHLTDADLRVIIDGYISHYDEIFQLKGVAAKSDVFHLITGMWISPAERCFLWMGGFRPSDLIKMLKTQLDPLTEQQMMGIYKLQQSSQQAEDALSQGLEQLHQSLVDTIAASPLIDGMNQMALAIGKLSNLEGFVRQADILRQQTLHQLRRILTVRQAARCYLVIGEYYNRLRALSSLWASRPRESLMNNIGNSCQTTPELQMIIQPSHNQFSSF 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 998637 1003362 + Conep18aG0020500.1 Cone18ag0202 457163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0202 524 Gene3D - 221 269 - -
Cone18ag0202 524 ProSiteProfiles DOG1 domain profile. 283 491 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone18ag0202 524 MobiDBLite consensus disorder prediction 1 33 - -
Cone18ag0202 524 CDD bZIP_HBP1b-like 222 273 - -
Cone18ag0202 524 Pfam Seed dormancy control 300 375 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone18ag0202 524 MobiDBLite consensus disorder prediction 168 196 - -
Cone18ag0202 524 FunFam BZIP family transcription factor 221 270 - -
Cone18ag0202 524 Coils Coil 241 268 - -
Cone18ag0202 524 SUPERFAMILY Leucine zipper domain 222 264 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0202 524 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0202 524 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 220 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0202 524 MobiDBLite consensus disorder prediction 123 147 - -
Cone18ag0202 524 PANTHER TRANSCRIPTION FACTOR TGA9 175 495 - -
Cone18ag0202 524 Pfam bZIP transcription factor 222 263 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0202 524 SMART brlzneu 218 280 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone18ag0202 524 MobiDBLite consensus disorder prediction 181 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0067 Cone-Chr10:388728 Cone18ag0202 Cone-Chr18:998637 3.76E-110 dispersed
Cone18ag0202 Cone-Chr18:998637 Cone5ag0986 Cone-Chr5:4227304 6.34E-117 dispersed
Cone1ag0533 Cone-Chr1:5313450 Cone18ag0202 Cone-Chr18:998637 1.24E-141 wgd
Cone11ag1384 Cone-Chr11:10034801 Cone18ag0202 Cone-Chr18:998637 2.82E-213 wgd
Cone18ag0202 Cone-Chr18:998637 Cone5ag1347 Cone-Chr5:8085681 1.85E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45140 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0202 K14431 - rcu:8271908 576.63