Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0207 ATGAAGATGGGTTTAATGAATTACACAGACCATCATCAAGAAAACAACATAAATTTCATTGAATGGCTTAAACCCTATTCATCGCCATCTTCTTCTTTTTCTTCATCTTCATCATCATCATCATCTTCTATCCAGTGTTTACCTCTTCTAAGCAGCTTCATGGAAACCAAGAAAGAAAGAGTCGAAGGAGAAGAAGAAATGGAGAAAGTTAAAGTGGGTTTGCAAATTGGGCTGCCAAACATTAATGAAGATTGTGATGGGCGTTATAATTCTCATCAGAATTATAAGATTTTTAAGAACGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAGAGGAAGATCAAGTGATTATGAAAAGAAGTTTTCATGGCTTGATCTCGTTTAGAAGTGAGAATACGAGGTTTTGGATCCCAACTCCTGCACAAATCCTTGTCGGACCAATGCAGTTTGCTTGCTCGATTTGCAGCAAAACATTCAATAGGTACAATAACATGCAGATGCATATGTGGGGACATGGATCGGAATACCGAAAAGGACCGGATTCATTAAGAGGAACACAACCGGCAGCAATGTTGAGGCTACCGTGTTACTGTTGTGCACAGGGTTGCAAGAACAACATAAACCATCCAAGAGCTAAGCCATTGAAGGATTTCAGGACTCTTCAAACACACTACAAAAGGAAGCACGGGGCCAAGCCATTTTGTTGCCGGAAGTTATGTGGGAAAACTTTTGCTGTCAAAGGGGACTGGAGAACCCATGAGAAGAACTGTGGGAAGTTATGGTATTGCATCTGTGGGGCCGATTTCAAACACAAGAGATCACTCAAAGATCATGTTCGATCTTTCGGAACTGGCCATTCACCGATCCCCCCTCCTGATGATGATCATCATCACCATGGATTTGATCAAGATGATAAGGAGTGCCTTACTGGGTCTGAAGATGAGTAA 954 41.51 MKMGLMNYTDHHQENNINFIEWLKPYSSPSSSFSSSSSSSSSSIQCLPLLSSFMETKKERVEGEEEMEKVKVGLQIGLPNINEDCDGRYNSHQNYKIFKNEEEEEEEEEEEEEEEDQVIMKRSFHGLISFRSENTRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGPDSLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFCCRKLCGKTFAVKGDWRTHEKNCGKLWYCICGADFKHKRSLKDHVRSFGTGHSPIPPPDDDHHHHGFDQDDKECLTGSEDE 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1021453 1023150 + Conep18aG0021000.1 Cone18ag0207 457168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0207 317 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 235 260 - -
Cone18ag0207 317 PANTHER ZINC FINGER PROTEIN WIP2 51 297 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cone18ag0207 317 Coils Coil 92 121 - -
Cone18ag0207 317 SUPERFAMILY beta-beta-alpha zinc fingers 222 257 IPR036236 -
Cone18ag0207 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 290 IPR013087 -
Cone18ag0207 317 MobiDBLite consensus disorder prediction 292 309 - -
Cone18ag0207 317 MobiDBLite consensus disorder prediction 283 317 - -
Cone18ag0207 317 Pfam Zinc finger, C2H2 type 152 171 IPR013087 -
Cone18ag0207 317 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Cone18ag0207 317 FunFam Zinc finger protein WIP2 205 288 - -
Cone18ag0207 317 SUPERFAMILY beta-beta-alpha zinc fingers 148 175 IPR036236 -
Cone18ag0207 317 Gene3D Classic Zinc Finger 151 174 - -
Cone18ag0207 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0207 Cone-Chr18:1021453 Cone6ag0465 Cone-Chr6:2295739 1.73E-103 dispersed
Cone11ag1379 Cone-Chr11:10001837 Cone18ag0207 Cone-Chr18:1021453 4.57E-189 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45141 PF00443 UCH 7.00E-45 CL0125 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0207 - - - 0.0