Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0208 ATGGCCGAAGAGCACAGATGCCAACCACCACAACTCTGCGCAAACAACTGCGGTTTCTTCGGCAGTCCGGCGACACAAAATCTGTGCTCGAAATGTCACCGAGATCTCCAACACAAAGAACAGCAATCTTCCTCCGCTAAACTCGTCCTGAACCAAACTCTGACCACCGCCACCGGTGCCACCGCATCCGCCTATTCCTCCTGCTCCTCCGTCTCCTCCTCTTCTAACGCTTCGTCAGCAATAGCAACTCCGTTAGCATCTCCCGAAGGAGAATCAGAGGTGATTTCCGGTGAGAGGGTGGGGACGACGCCGGCGGAGGAGGTCGTTCAGGTGGCGGCGCATCCGAATAGATGCTTGACGTGCCGGCGGCGAGTAGGGGTCACGGGCTTCAAGTGCCGTTGCGGGATGACGTTCTGTGGGACCCACCGGTACCCTGAGCAGCACGCATGTTCGTTCGACTTCAAGGGGATGGGCAAGGAACAGATCGCGAAGGCGAATCCGATCGTCAGGGCGGAGAAACTCGACAAGATCTGA 534 57.68 MAEEHRCQPPQLCANNCGFFGSPATQNLCSKCHRDLQHKEQQSSSAKLVLNQTLTTATGATASAYSSCSSVSSSSNASSAIATPLASPEGESEVISGERVGTTPAEEVVQVAAHPNRCLTCRRRVGVTGFKCRCGMTFCGTHRYPEQHACSFDFKGMGKEQIAKANPIVRAEKLDKI 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1024337 1025647 - Conep18aG0021100.1 Cone18ag0208 457169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0208 177 Gene3D - 1 83 - -
Cone18ag0208 177 Pfam AN1-like Zinc finger 120 154 IPR000058 GO:0008270(InterPro)
Cone18ag0208 177 ProSiteProfiles Zinc finger AN1-type profile. 112 158 IPR000058 GO:0008270(InterPro)
Cone18ag0208 177 SUPERFAMILY AN1-like Zinc finger 106 172 IPR035896 -
Cone18ag0208 177 PANTHER AN1-TYPE ZINC FINGER PROTEIN 3 177 IPR050652 -
Cone18ag0208 177 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone18ag0208 177 SMART A20_3 10 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Cone18ag0208 177 Gene3D - 95 173 IPR035896 -
Cone18ag0208 177 SMART AN1_Zf_4 118 155 IPR000058 GO:0008270(InterPro)
Cone18ag0208 177 FunFam Zinc finger AN1-type containing 6 95 173 - -
Cone18ag0208 177 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
Cone18ag0208 177 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0164 Cone-Chr10:815531 Cone18ag0208 Cone-Chr18:1024337 3.28E-50 dispersed
Cone18ag0208 Cone-Chr18:1024337 Cone20ag1076 Cone-Chr20:7492457 5.58E-42 dispersed
Cone11ag1378 Cone-Chr11:9999942 Cone18ag0208 Cone-Chr18:1024337 6.34E-26 wgd
Cone13ag1190 Cone-Chr13:9240133 Cone18ag0208 Cone-Chr18:1024337 1.61E-51 wgd
Cone18ag0208 Cone-Chr18:1024337 Cone19ag1173 Cone-Chr19:8258367 2.55E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0208 - - - 0.0