Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0217 ATGGGAACGCTCATCAATACATCTGAAATAGTTGAGTCAGTGGAAGAATCAGATTCTGGAGTAGAAACAAACGGAAAAGATGCAAATCACTATATGCAAAACTCTGGAAAAAGGTGTTCGATAGAGGATGATATCAATCGTCTATTTCAGGGAATAGACATCAGAACGTCAAGTAGAGATGCTTTGCGAAAAAGTGCAATGAAAAGGCCAATTAGACCGAGTTCATCTCAAGTGTCTGGGATTGGAATTTCCGAGCCAGTGAGTTTAAAACAGGCTCTAAGAGGGTTGTGTGTCTCTCAGGCAGCAGAAACGGCTGCTATGAAGAGATTATCAAGGTCCACGCGATCTTCAGGAGTATCAGAATCCGGAACAATAAAAAAGTTGTACAGGGCAGTTGTAGTTGAGGCTGATGGATCTAGTGTTTCTATAAATGTTAAAGGTAAGGGGAATTTGGTTGAGTTCACCCTTGTTCCTGACCCCATCGGTTCAACTTTTTCGAGGGAGATTTCTGAATCCTTAGAGAATTCTTCCAAGGCAGAGCCATCAAATTCAGGGTCTAACAATTCTTATCCTTTGGATGATTCACCAAAACAAAAGACTAACTTACAAATGGAGGTAGGGTCTGAGTTACCAAAGGAAGAGGTTGAAAAACTGAAATCGATCGAACCTTCTTCCGTTTCACATTCCGGCAAAAAAGTCCTACCACTGGATGAAAGTAAGCCAAGCAAATCGAATTGCAATAGTCCACGTTTAATCAAGCCTTTATTCAGGACCAAGAGTTTCGTGAAGAAGAAGGCAAAGCTGGAATCAAGCGCTTCCTCCAGTGCTTCCAATCCATGTCTGGGAAAATCTGACACTGACTTGGGTCCCGCTACAAATGATTTGGGGGTCCAGATGCCTTCTGATACTCTCAATCATGAAAACATGGGAATTGACAAAGCTTCACTGGAGAGCAGTGAGGTCAGGTCAAGTATGATGGAAAGGAGTTTAATTAGACCTGGTCTCTCTTCTAGTTGCAATAACAGAACTAGATCACTAGGAACAAACTCTGATGAGACATCAAGATTCAGAGAAAAGGGTGAGTTCTCCCAAAGCTCAAAAAGCAGTATCGGCGATTTTAGCAGTAGCCCAAGCATTAGTGGTGAGATCATTCTCAGTTGGTCTAGTCGAAGCGGGAATAGGGCCCACCTGTCAAAAGACTTGAGATGGGAAGCCATCCACCATGTTCAAAAGCAGCATCAATCTGTGGGTTTCAAAGACTTTAAGATTCTTAGGAGGCTAGGTCTTGGGGATATAGGGTCTGTGTACCTTGCTGAACTAAGCGATACCAGATGTCTGTTTGCTTTGAAAGTGATGGATATGGATTTTTTGACGAGTAGGAAGAAAATTCTCAGAGCCCAAACGGAGAAAGAGATTCTTCAAATTCTGGACCACCCTTTTCTCCCTACTCTTTACGCCCATTTCGAAACAGATAAGCAATCATGCTTAGTCATTGACTATTGTCCAGGTGGAGATTTACATGTTCTCCGGCAAAAGCAACATGGCCGGAATTTCTCTGAGCAAGCAACCAGATTCTATGTTGCTGAAATTCTCCTTGCCCTAGAGTATTTGCACATGCTAGGAGTTGTGTACAGGGACCTCAAACCGGAAAACATCTTGGTCCGAGAAGATGGTCACATTATGCTCACAGATTTCGACTTATCACTCAGATGCACAGCCAATACAATGGTTGTGCTTAAATCATCTTCCCCCACCAGGGAGCCCACAAAAAAGACCCATTATCCATGTGATGGATCTTCTTGCATCGACCCTTTCTGTCTTCAACCATCCTGGCAAGTCCCATGTTTCACTCCTAGGCTTCTCATAACCTCGACACCACCAAAAACCCGGAAGATGAAATCTGACCCATTGGCCCAAGTCAGCCCACTTCCTCAGCTTGTAGTGGAGCCCACTGGGGCCCGATCCAACTCGTTCGTTGGAACCTATGAATACCTTGCTCCTGAAATCATAAAAAACGATGGGCATGGTAGTGCTGTTGATTGGTGGACTTACGGGATTTTTCTGTTCGAGCTACTGTATGGTAAGACTCCCTTTAAAGGGCCCGGAAATGATGAAACTTTAGCAAACATAGTGTCACAAAGCCTCAGGTTTCCAAATAGCCCTATTGTTAGTTTTCATGCACGGGACTTGATCCGCGCCCTACTGGTGAAGGAACCTGAAAATCGGTTAGGGTCTGTGAAAGGAGCGGTAGAGATAAAGCAACATCCTTTCTTCGATGGGCTTAATTGGGCTCTGATTCGGTGTGCTGTTCCCCCCGAGCTGCCCAAGTTTTCTGATTTCGGAATCGGTGGACCGCAGTTAATAGGCTTGTGGAAAAAGGATGGACCTAAGCAAAGAGAAGTTGAAAATATGGGAGTAGATGATCCAGTGTTTGAGATGTTTTAG 2445 44.05 MGTLINTSEIVESVEESDSGVETNGKDANHYMQNSGKRCSIEDDINRLFQGIDIRTSSRDALRKSAMKRPIRPSSSQVSGIGISEPVSLKQALRGLCVSQAAETAAMKRLSRSTRSSGVSESGTIKKLYRAVVVEADGSSVSINVKGKGNLVEFTLVPDPIGSTFSREISESLENSSKAEPSNSGSNNSYPLDDSPKQKTNLQMEVGSELPKEEVEKLKSIEPSSVSHSGKKVLPLDESKPSKSNCNSPRLIKPLFRTKSFVKKKAKLESSASSSASNPCLGKSDTDLGPATNDLGVQMPSDTLNHENMGIDKASLESSEVRSSMMERSLIRPGLSSSCNNRTRSLGTNSDETSRFREKGEFSQSSKSSIGDFSSSPSISGEIILSWSSRSGNRAHLSKDLRWEAIHHVQKQHQSVGFKDFKILRRLGLGDIGSVYLAELSDTRCLFALKVMDMDFLTSRKKILRAQTEKEILQILDHPFLPTLYAHFETDKQSCLVIDYCPGGDLHVLRQKQHGRNFSEQATRFYVAEILLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCTANTMVVLKSSSPTREPTKKTHYPCDGSSCIDPFCLQPSWQVPCFTPRLLITSTPPKTRKMKSDPLAQVSPLPQLVVEPTGARSNSFVGTYEYLAPEIIKNDGHGSAVDWWTYGIFLFELLYGKTPFKGPGNDETLANIVSQSLRFPNSPIVSFHARDLIRALLVKEPENRLGSVKGAVEIKQHPFFDGLNWALIRCAVPPELPKFSDFGIGGPQLIGLWKKDGPKQREVENMGVDDPVFEMF 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1076442 1078977 + Conep18aG0022000.1 Cone18ag0217 457178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0217 814 Gene3D Transferase(Phosphotransferase) domain 1 653 776 - -
Cone18ag0217 814 FunFam serine/threonine-protein kinase D6PK-like 505 572 - -
Cone18ag0217 814 Gene3D Phosphorylase Kinase; domain 1 419 500 - -
Cone18ag0217 814 CDD STKc_phototropin_like 419 781 - -
Cone18ag0217 814 ProSiteProfiles Protein kinase domain profile. 421 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0217 814 MobiDBLite consensus disorder prediction 333 350 - -
Cone18ag0217 814 SMART serkin_6 421 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0217 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0217 814 MobiDBLite consensus disorder prediction 169 250 - -
Cone18ag0217 814 MobiDBLite consensus disorder prediction 268 294 - -
Cone18ag0217 814 Gene3D Transferase(Phosphotransferase) domain 1 501 571 - -
Cone18ag0217 814 MobiDBLite consensus disorder prediction 169 205 - -
Cone18ag0217 814 Pfam Protein kinase domain 655 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0217 814 Pfam Protein kinase domain 422 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0217 814 MobiDBLite consensus disorder prediction 333 361 - -
Cone18ag0217 814 MobiDBLite consensus disorder prediction 268 282 - -
Cone18ag0217 814 FunFam Serine/threonine-protein kinase D6PK-like 419 504 - -
Cone18ag0217 814 SUPERFAMILY Protein kinase-like (PK-like) 398 775 IPR011009 -
Cone18ag0217 814 PANTHER FLIPPASE KINASE 1-RELATED 278 777 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone18ag0217 814 FunFam serine/threonine-protein kinase D6PK-like 653 776 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0217 Cone-Chr18:1076442 Cone3ag0209 Cone-Chr3:1113014 7.97E-231 dispersed
Cone1ag0527 Cone-Chr1:5199629 Cone18ag0217 Cone-Chr18:1076442 9.12E-126 wgd
Cone10ag0177 Cone-Chr10:861393 Cone18ag0217 Cone-Chr18:1076442 2.16E-225 wgd
Cone11ag1025 Cone-Chr11:8118512 Cone18ag0217 Cone-Chr18:1076442 1.81E-23 wgd
Cone11ag1361 Cone-Chr11:9912074 Cone18ag0217 Cone-Chr18:1076442 0 wgd
Cone13ag1200 Cone-Chr13:9287179 Cone18ag0217 Cone-Chr18:1076442 3.57E-194 wgd
Cone18ag0217 Cone-Chr18:1076442 Cone19ag1184 Cone-Chr19:8299360 3.54E-201 wgd
Cone18ag0217 Cone-Chr18:1076442 Cone5ag1353 Cone-Chr5:8149607 4.80E-129 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82306 PF02469 Fasciclin 2.20E-07 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0217 - - - 0.0