Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0237 ATGGCGTTAACTCAGTGGCCAAATCTCCTTAATTTTCCTCCTCAATCTTCTTCTACACCGTTTGATTACTACCGTTCTGTTCAAACTCCATGGGTTCTGTCCCTCTCTGCGTCGCAGAAAATATCGTTGGTTCCGTTTGAGGTGAGATTCGCGTCGAGAGCGAAATGCTTTGCCAAGGCCACGGAGGAGGAGAGACGGAGTGGGTCAGAAACTGTAGATGCTGATGTTGACGAATTGAGACAGAAGGATCGCGATGATGACATCATCACTGTTCAGCAGAGTTCTGTACCTGCAGAAACTCCTCTGCAGAGATTTCCATCATCTTCGTCGTCTAGTGATTACCTCTCGCTTGGTATTCGTGAGCCTGTTTACGAGGTGGTAGAAGTGAAGCCAGATGCAACAGTATCTACTAGGAAGATTAATAGACGTCAATTATTGAAGTCAAGCGGTCTACGTCCCCGCGACATTCGGAGTGTAGATCCATCTTTATTCCTTACAAATTCCATGCCTTCTTTAGTGGTTCGTGAGCATGCTATTTTACTCAATCTGGGTTCATTACGAGCAATAGCAATGAAGGAGCGTGTCCTCATATTTAACTACAACCTTAAAGGAGGGAAGGCCTTTATCGAGTCATTGTTGCCTCGATTGAACCCAAAAAACATTAACGGAGGACACGCTATGCCATTTGAGCTTGAGGTTGTTGAAGCAGCTTTGCACTCACGGATACAACGTTTGGAAAATAGGCTTATGGACTTAGAACCTCGTGTACAAGCTCTACTTGAGGTCCTGCCAAATCGATTAACGGCTGATGTACTGGAGCAACTTCGTATTAGCAAGCAAACGCTGGTTGAATTGGGTTCTAGGGCAGGGGCTCTCAAACAAATGCTATTTGATCTTCTTGAAGACTCTGATGAAATACGTCGGATATGTATAATGGGAAGAAATTGCACGGTTAAGAAAGGAAATGGAGATGTGGAGTGCTCTGTTCCTCATGAAAAGCAGATTGCTGAGGAAGAAGAGGAAGAAATCGAGATGCTTCTGGAAAATTATCTCCAAAGATGTGAATCTTGTCATGGTCAGGCTGAAAGACTTCTCGACTCTGCAAAAGAGATGGAAGATTCTATTGCTGTCAATTTGAGCTCGAGGAGGTTGGAGGTTAGCAGGGTAGAATTGCTTCTCCAAGTTGGGGCATTTTGTGTAGCAATTGGTGCTTTAATTGCCGGTATATTTGGCATGAATTTGAGATCCTATCTAGAAGAACATGTGTTTGCATTTTGGCTGACAACAGCCGCGATTATTTTCGGCGCGGTCGTGGCATTTTTCGTTATAACATCAGATAATCGAGGAACTATATTTGATTTGGGTACAACTTTGGCTTACCTTGCTGAAGTAGCTTATGATCCTTTCGTGGCTTCTGCAGTGATGGTTTTGTGTGGTTTTCCGGCATCATTGACACTCGAGAGGGCTTTTCCGACGAACCATGGGGTGAAGATGGATCGACTCATAGCTCGAGACGCACTCAGGCATCGGAGAAGATTGCAGTCTTCTGGAAGCGTTATTGATTTCACCGTCGCTGGTTCTTACGATCCGTTTCAAGTTGGGCTCTACTATACAAAAGTTCAATTAGGAACTCCTCCAAAGGATTTTTATGTGCAGATTGACACCGGAAGTGATGTTCTATGGGTCAGCTGCAGCTCATGCAATGGCTGCCCTGGAACCAGTGGACTCCAAATTCAGCTCAATTTCTATGATCCTGCAAGCTCATCAACTGCTTCATCGGTCTCTTGCTCGGACCAATTATGCACTTTAGGAGCTCAATCCTCAGATTCGGCATGTTCATCTCAGAACAGCCGGTGTGGTTACACTTTCCAGTATGGAGACGGAAGTGGAGCATCTGGCTATTACTTCAAAGACTTGATGCATTTCGACACCATAGTTGGAAGCTCCATTACTTCAAATTCTTCAGCTCCTGTTGTCTTTGGGTGTAGCAACTCATTGACAGGGGACTTGACAAAATCGGATAGAGCAGTTGATGGAATTTTTGGATTTGGTCAACAGAGCATGTCAATTATCTCACAACTTTCTTCAGGAGGAGTAGCACCAAATGTGTTCTCTCATTGCTTGAGAGGAGACCAAAGTGGAGGTGGAATTCTTGTTCTTGGTGAGATTGTTGAGCCAAATATCGTTTGGACTCCTCTTGTCCAATCACAGCCTCATTATAATTTGAATCTGCAAAGCATTTCTGTGAATGGCCAAGTTCTATCTATTGATCAAACTGTTTTTGCAACATCAAGTAGCCAAGGAACAATAGTTGATTCGGGCACAACTTTGGCCTACCTTGCTGAATCAGCTTATGACACTTTCGTGACAGCCATCACTATTATAATTTCACAATCTACACAATCCATTGTTTCAAAAGGGAGTCAGTGCTATATCACTACCTCCAGTATTAATGATATATTTCCGCAAGTTAGCTTAAACTTTGCTGGTGGTGCTTCAATGATATTAAGACCTCAGGATTACCTTATACAACAGAACTCAGTTGGTAGTACTTTTGTCTGGTGCTTGGGTATTCAGAAAATTCAAGGTCAAGGGTTAACTATTTTAGGAGACCTAGTTCTAAAGGACAAAATTGTTATATATGATTTAGCCAGTCAACGAATTGGATGGGTTCAACATCAGCGAATGTCTCGACGACTAGTACTTCCGGAAAAAAAACTGTTTGATTCGGAGCAAAAGCGCCCCAAAGCAAAAGGTAAAGAAGCATCATCTTCCCAAAGAGTTGCCAAACAGAAAACACAAAAAGAGGTTGCTTATGCTGCATCAAAGGGAAACCAAAACCTCCCTCTTAGTTCCCTTATAAGATGA 2868 43.17 MALTQWPNLLNFPPQSSSTPFDYYRSVQTPWVLSLSASQKISLVPFEVRFASRAKCFAKATEEERRSGSETVDADVDELRQKDRDDDIITVQQSSVPAETPLQRFPSSSSSSDYLSLGIREPVYEVVEVKPDATVSTRKINRRQLLKSSGLRPRDIRSVDPSLFLTNSMPSLVVREHAILLNLGSLRAIAMKERVLIFNYNLKGGKAFIESLLPRLNPKNINGGHAMPFELEVVEAALHSRIQRLENRLMDLEPRVQALLEVLPNRLTADVLEQLRISKQTLVELGSRAGALKQMLFDLLEDSDEIRRICIMGRNCTVKKGNGDVECSVPHEKQIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAIGALIAGIFGMNLRSYLEEHVFAFWLTTAAIIFGAVVAFFVITSDNRGTIFDLGTTLAYLAEVAYDPFVASAVMVLCGFPASLTLERAFPTNHGVKMDRLIARDALRHRRRLQSSGSVIDFTVAGSYDPFQVGLYYTKVQLGTPPKDFYVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFYDPASSSTASSVSCSDQLCTLGAQSSDSACSSQNSRCGYTFQYGDGSGASGYYFKDLMHFDTIVGSSITSNSSAPVVFGCSNSLTGDLTKSDRAVDGIFGFGQQSMSIISQLSSGGVAPNVFSHCLRGDQSGGGILVLGEIVEPNIVWTPLVQSQPHYNLNLQSISVNGQVLSIDQTVFATSSSQGTIVDSGTTLAYLAESAYDTFVTAITIIISQSTQSIVSKGSQCYITTSSINDIFPQVSLNFAGGASMILRPQDYLIQQNSVGSTFVWCLGIQKIQGQGLTILGDLVLKDKIVIYDLASQRIGWVQHQRMSRRLVLPEKKLFDSEQKRPKAKGKEASSSQRVAKQKTQKEVAYAASKGNQNLPLSSLIR 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1158421 1167104 + Conep18aG0024200.1 Cone18ag0237 457198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0237 955 FunFam Aspartic proteinase-like protein 2 723 898 - -
Cone18ag0237 955 Gene3D Acid Proteases 514 722 IPR021109 -
Cone18ag0237 955 PRINTS Pepsin (A1) aspartic protease family signature 542 562 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 PRINTS Pepsin (A1) aspartic protease family signature 692 705 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 PRINTS Pepsin (A1) aspartic protease family signature 867 882 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 PRINTS Pepsin (A1) aspartic protease family signature 769 780 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 CDD Mrs2_Mfm1p-like 126 443 IPR039204 -
Cone18ag0237 955 Gene3D Magnesium transport protein CorA, transmembrane region 201 384 - -
Cone18ag0237 955 FunFam Aspartic proteinase-like protein 2 519 722 - -
Cone18ag0237 955 MobiDBLite consensus disorder prediction 910 925 - -
Cone18ag0237 955 FunFam Magnesium transporter MRS2-11, chloroplastic 202 384 - -
Cone18ag0237 955 Gene3D Acid Proteases 723 898 IPR021109 -
Cone18ag0237 955 Coils Coil 333 353 - -
Cone18ag0237 955 PANTHER ASPARTYL PROTEASES 485 892 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 FunFam Magnesium transporter MRS2-11, chloroplastic 119 200 - -
Cone18ag0237 955 ProSiteProfiles Peptidase family A1 domain profile. 536 891 IPR033121 -
Cone18ag0237 955 MobiDBLite consensus disorder prediction 910 936 - -
Cone18ag0237 955 Gene3D - 121 200 - -
Cone18ag0237 955 CDD pepsin_A_like_plant 536 894 IPR034161 -
Cone18ag0237 955 SUPERFAMILY Acid proteases 531 894 IPR021109 -
Cone18ag0237 955 Pfam Xylanase inhibitor N-terminal 536 721 IPR032861 -
Cone18ag0237 955 Pfam Magnesium transporter MRS2-like 128 383 - -
Cone18ag0237 955 Pfam Xylanase inhibitor C-terminal 739 890 IPR032799 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0237 Cone-Chr18:1158421 Cone3ag0624 Cone-Chr3:3084087 1.28E-90 dispersed
Cone11ag1343 Cone-Chr11:9838458 Cone18ag0237 Cone-Chr18:1158421 1.54E-272 transposed
Cone6ag0961 Cone-Chr6:5098242 Cone18ag0237 Cone-Chr18:1158421 1.34E-165 transposed
Cone11ag1342 Cone-Chr11:9829868 Cone18ag0237 Cone-Chr18:1158421 1.27E-236 wgd
Cone13ag1230 Cone-Chr13:9432965 Cone18ag0237 Cone-Chr18:1158421 2.42E-126 wgd
Cone18ag0237 Cone-Chr18:1158421 Cone5ag1375 Cone-Chr5:8385138 5.21E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0237 - - - 0.0