Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0237 ATGGCGTTAACTCAGTGGCCAAATCTCCTTAATTTTCCTCCTCAATCTTCTTCTACACCGTTTGATTACTACCGTTCTGTTCAAACTCCATGGGTTCTGTCCCTCTCTGCGTCGCAGAAAATATCGTTGGTTCCGTTTGAGGTGAGATTCGCGTCGAGAGCGAAATGCTTTGCCAAGGCCACGGAGGAGGAGAGACGGAGTGGGTCAGAAACTGTAGATGCTGATGTTGACGAATTGAGACAGAAGGATCGCGATGATGACATCATCACTGTTCAGCAGAGTTCTGTACCTGCAGAAACTCCTCTGCAGAGATTTCCATCATCTTCGTCGTCTAGTGATTACCTCTCGCTTGGTATTCGTGAGCCTGTTTACGAGGTGGTAGAAGTGAAGCCAGATGCAACAGTATCTACTAGGAAGATTAATAGACGTCAATTATTGAAGTCAAGCGGTCTACGTCCCCGCGACATTCGGAGTGTAGATCCATCTTTATTCCTTACAAATTCCATGCCTTCTTTAGTGGTTCGTGAGCATGCTATTTTACTCAATCTGGGTTCATTACGAGCAATAGCAATGAAGGAGCGTGTCCTCATATTTAACTACAACCTTAAAGGAGGGAAGGCCTTTATCGAGTCATTGTTGCCTCGATTGAACCCAAAAAACATTAACGGAGGACACGCTATGCCATTTGAGCTTGAGGTTGTTGAAGCAGCTTTGCACTCACGGATACAACGTTTGGAAAATAGGCTTATGGACTTAGAACCTCGTGTACAAGCTCTACTTGAGGTCCTGCCAAATCGATTAACGGCTGATGTACTGGAGCAACTTCGTATTAGCAAGCAAACGCTGGTTGAATTGGGTTCTAGGGCAGGGGCTCTCAAACAAATGCTATTTGATCTTCTTGAAGACTCTGATGAAATACGTCGGATATGTATAATGGGAAGAAATTGCACGGTTAAGAAAGGAAATGGAGATGTGGAGTGCTCTGTTCCTCATGAAAAGCAGATTGCTGAGGAAGAAGAGGAAGAAATCGAGATGCTTCTGGAAAATTATCTCCAAAGATGTGAATCTTGTCATGGTCAGGCTGAAAGACTTCTCGACTCTGCAAAAGAGATGGAAGATTCTATTGCTGTCAATTTGAGCTCGAGGAGGTTGGAGGTTAGCAGGGTAGAATTGCTTCTCCAAGTTGGGGCATTTTGTGTAGCAATTGGTGCTTTAATTGCCGGTATATTTGGCATGAATTTGAGATCCTATCTAGAAGAACATGTGTTTGCATTTTGGCTGACAACAGCCGCGATTATTTTCGGCGCGGTCGTGGCATTTTTCGTTATAACATCAGATAATCGAGGAACTATATTTGATTTGGGTACAACTTTGGCTTACCTTGCTGAAGTAGCTTATGATCCTTTCGTGGCTTCTGCAGTGATGGTTTTGTGTGGTTTTCCGGCATCATTGACACTCGAGAGGGCTTTTCCGACGAACCATGGGGTGAAGATGGATCGACTCATAGCTCGAGACGCACTCAGGCATCGGAGAAGATTGCAGTCTTCTGGAAGCGTTATTGATTTCACCGTCGCTGGTTCTTACGATCCGTTTCAAGTTGGGCTCTACTATACAAAAGTTCAATTAGGAACTCCTCCAAAGGATTTTTATGTGCAGATTGACACCGGAAGTGATGTTCTATGGGTCAGCTGCAGCTCATGCAATGGCTGCCCTGGAACCAGTGGACTCCAAATTCAGCTCAATTTCTATGATCCTGCAAGCTCATCAACTGCTTCATCGGTCTCTTGCTCGGACCAATTATGCACTTTAGGAGCTCAATCCTCAGATTCGGCATGTTCATCTCAGAACAGCCGGTGTGGTTACACTTTCCAGTATGGAGACGGAAGTGGAGCATCTGGCTATTACTTCAAAGACTTGATGCATTTCGACACCATAGTTGGAAGCTCCATTACTTCAAATTCTTCAGCTCCTGTTGTCTTTGGGTGTAGCAACTCATTGACAGGGGACTTGACAAAATCGGATAGAGCAGTTGATGGAATTTTTGGATTTGGTCAACAGAGCATGTCAATTATCTCACAACTTTCTTCAGGAGGAGTAGCACCAAATGTGTTCTCTCATTGCTTGAGAGGAGACCAAAGTGGAGGTGGAATTCTTGTTCTTGGTGAGATTGTTGAGCCAAATATCGTTTGGACTCCTCTTGTCCAATCACAGCCTCATTATAATTTGAATCTGCAAAGCATTTCTGTGAATGGCCAAGTTCTATCTATTGATCAAACTGTTTTTGCAACATCAAGTAGCCAAGGAACAATAGTTGATTCGGGCACAACTTTGGCCTACCTTGCTGAATCAGCTTATGACACTTTCGTGACAGCCATCACTATTATAATTTCACAATCTACACAATCCATTGTTTCAAAAGGGAGTCAGTGCTATATCACTACCTCCAGTATTAATGATATATTTCCGCAAGTTAGCTTAAACTTTGCTGGTGGTGCTTCAATGATATTAAGACCTCAGGATTACCTTATACAACAGAACTCAGTTGGTAGTACTTTTGTCTGGTGCTTGGGTATTCAGAAAATTCAAGGTCAAGGGTTAACTATTTTAGGAGACCTAGTTCTAAAGGACAAAATTGTTATATATGATTTAGCCAGTCAACGAATTGGATGGGTTCAACATCAGCGAATGTCTCGACGACTAGTACTTCCGGAAAAAAAACTGTTTGATTCGGAGCAAAAGCGCCCCAAAGCAAAAGGTAAAGAAGCATCATCTTCCCAAAGAGTTGCCAAACAGAAAACACAAAAAGAGGTTGCTTATGCTGCATCAAAGGGAAACCAAAACCTCCCTCTTAGTTCCCTTATAAGATGA 2868 43.17 MALTQWPNLLNFPPQSSSTPFDYYRSVQTPWVLSLSASQKISLVPFEVRFASRAKCFAKATEEERRSGSETVDADVDELRQKDRDDDIITVQQSSVPAETPLQRFPSSSSSSDYLSLGIREPVYEVVEVKPDATVSTRKINRRQLLKSSGLRPRDIRSVDPSLFLTNSMPSLVVREHAILLNLGSLRAIAMKERVLIFNYNLKGGKAFIESLLPRLNPKNINGGHAMPFELEVVEAALHSRIQRLENRLMDLEPRVQALLEVLPNRLTADVLEQLRISKQTLVELGSRAGALKQMLFDLLEDSDEIRRICIMGRNCTVKKGNGDVECSVPHEKQIAEEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGAFCVAIGALIAGIFGMNLRSYLEEHVFAFWLTTAAIIFGAVVAFFVITSDNRGTIFDLGTTLAYLAEVAYDPFVASAVMVLCGFPASLTLERAFPTNHGVKMDRLIARDALRHRRRLQSSGSVIDFTVAGSYDPFQVGLYYTKVQLGTPPKDFYVQIDTGSDVLWVSCSSCNGCPGTSGLQIQLNFYDPASSSTASSVSCSDQLCTLGAQSSDSACSSQNSRCGYTFQYGDGSGASGYYFKDLMHFDTIVGSSITSNSSAPVVFGCSNSLTGDLTKSDRAVDGIFGFGQQSMSIISQLSSGGVAPNVFSHCLRGDQSGGGILVLGEIVEPNIVWTPLVQSQPHYNLNLQSISVNGQVLSIDQTVFATSSSQGTIVDSGTTLAYLAESAYDTFVTAITIIISQSTQSIVSKGSQCYITTSSINDIFPQVSLNFAGGASMILRPQDYLIQQNSVGSTFVWCLGIQKIQGQGLTILGDLVLKDKIVIYDLASQRIGWVQHQRMSRRLVLPEKKLFDSEQKRPKAKGKEASSSQRVAKQKTQKEVAYAASKGNQNLPLSSLIR 955
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1158421 1167104 + Conep18aG0024200.1 Cone18ag0237 457198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0237 955 FunFam Aspartic proteinase-like protein 2 723 898 - -
Cone18ag0237 955 Gene3D Acid Proteases 514 722 IPR021109 -
Cone18ag0237 955 PRINTS Pepsin (A1) aspartic protease family signature 542 562 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 PRINTS Pepsin (A1) aspartic protease family signature 692 705 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 PRINTS Pepsin (A1) aspartic protease family signature 867 882 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 PRINTS Pepsin (A1) aspartic protease family signature 769 780 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 CDD Mrs2_Mfm1p-like 126 443 IPR039204 -
Cone18ag0237 955 Gene3D Magnesium transport protein CorA, transmembrane region 201 384 - -
Cone18ag0237 955 FunFam Aspartic proteinase-like protein 2 519 722 - -
Cone18ag0237 955 MobiDBLite consensus disorder prediction 910 925 - -
Cone18ag0237 955 FunFam Magnesium transporter MRS2-11, chloroplastic 202 384 - -
Cone18ag0237 955 Gene3D Acid Proteases 723 898 IPR021109 -
Cone18ag0237 955 Coils Coil 333 353 - -
Cone18ag0237 955 PANTHER ASPARTYL PROTEASES 485 892 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Cone18ag0237 955 FunFam Magnesium transporter MRS2-11, chloroplastic 119 200 - -
Cone18ag0237 955 ProSiteProfiles Peptidase family A1 domain profile. 536 891 IPR033121 -
Cone18ag0237 955 MobiDBLite consensus disorder prediction 910 936 - -
Cone18ag0237 955 Gene3D - 121 200 - -
Cone18ag0237 955 CDD pepsin_A_like_plant 536 894 IPR034161 -
Cone18ag0237 955 SUPERFAMILY Acid proteases 531 894 IPR021109 -
Cone18ag0237 955 Pfam Xylanase inhibitor N-terminal 536 721 IPR032861 -
Cone18ag0237 955 Pfam Magnesium transporter MRS2-like 128 383 - -
Cone18ag0237 955 Pfam Xylanase inhibitor C-terminal 739 890 IPR032799 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0237 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0237 Cone-Chr18:1158421 Cone3ag0624 Cone-Chr3:3084087 1.28E-90 dispersed
Cone11ag1343 Cone-Chr11:9838458 Cone18ag0237 Cone-Chr18:1158421 1.54E-272 transposed
Cone6ag0961 Cone-Chr6:5098242 Cone18ag0237 Cone-Chr18:1158421 1.34E-165 transposed
Cone11ag1342 Cone-Chr11:9829868 Cone18ag0237 Cone-Chr18:1158421 1.27E-236 wgd
Cone13ag1230 Cone-Chr13:9432965 Cone18ag0237 Cone-Chr18:1158421 2.42E-126 wgd
Cone18ag0237 Cone-Chr18:1158421 Cone5ag1375 Cone-Chr5:8385138 5.21E-212 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1134 . Blo03g01303 . . . Bpe08g01293 . Bma07g01468 . . . . . . . . . Bhi08g00115 . . . . . . . . . . . . . . . Cone18ag0237 Cone11ag1343 . . . . . . . Bda09g00228 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme12g00517
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone17ag0276 . 1 444 MRS2 Gene Family AT1G16010 81.3 1.8e-197 686.0
Cone11ag0946 . 1 441 MRS2 Gene Family AT1G16010 80.5 1.6e-193 672.9
Cone20ag1134 . 1 353 MRS2 Gene Family AT1G16010 81.9 4.4e-156 548.5
Cone9ag0537 . 14 423 MRS2 Gene Family AT1G16010 52.1 4.3e-111 399.1
Cone7ag1020 . 16 376 MRS2 Gene Family AT1G16010 50.3 6.1e-89 325.5
Cone15ag0138 . 1 369 MRS2 Gene Family AT5G64560 79.9 3.1e-158 555.4
Cone7ag1020 . 10 362 MRS2 Gene Family AT5G64560 69.3 5.7e-128 454.9
Cone14ag0131 . 32 307 MRS2 Gene Family AT5G64560 82.6 9.7e-120 427.6
Cone17ag0276 . 51 402 MRS2 Gene Family AT5G64560 50.9 2.5e-83 306.6
Cone7ag0295 . 3 169 MRS2 Gene Family AT5G64560 60.1 2.1e-37 154.1
Cone4ag0291 . 2 157 MRS2 Gene Family AT5G64560 57.9 6.0e-37 152.5
Cone3ag1040 . 40 472 MRS2 Gene Family AT3G19640 62.4 2.7e-138 489.6
Cone10ag0893 . 1 414 MRS2 Gene Family AT3G58970 66.8 3.6e-142 502.3
Cone3ag0920 . 1 414 MRS2 Gene Family AT3G58970 66.4 1.0e-141 500.7
Cone9ag0537 . 11 423 MRS2 Gene Family AT2G03620 66.0 2.3e-138 489.6
Cone17ag0276 . 13 444 MRS2 Gene Family AT2G03620 54.2 4.4e-113 405.6
Cone11ag0946 . 13 441 MRS2 Gene Family AT2G03620 54.0 2.2e-112 403.3
Cone20ag1134 . 13 353 MRS2 Gene Family AT2G03620 52.9 3.1e-82 303.1
Cone10ag0893 . 42 413 MRS2 Gene Family AT4G28580 51.7 1.2e-91 334.3
Cone3ag0920 . 42 413 MRS2 Gene Family AT4G28580 51.2 6.0e-91 332.0
Cone15ag0138 . 1 331 MRS2 Gene Family AT5G09690 72.1 1.0e-122 437.2
Cone7ag1020 . 5 324 MRS2 Gene Family AT5G09690 62.8 6.6e-101 364.8
Cone14ag0131 . 32 269 MRS2 Gene Family AT5G09690 72.0 7.3e-84 308.1
Cone17ag0276 . 43 380 MRS2 Gene Family AT5G09690 51.0 3.9e-77 285.8
Cone10ag0893 . 39 350 MRS2 Gene Family AT5G09690 50.2 6.8e-74 275.0
Cone3ag0920 . 39 350 MRS2 Gene Family AT5G09690 50.2 1.3e-72 270.8
Cone4ag1110 . 5 217 MRS2 Gene Family AT5G09690 58.1 9.0e-58 221.5
Cone15ag0138 . 23 291 MRS2 Gene Family AT5G09720 65.4 3.4e-88 322.4
Cone7ag1020 . 13 295 MRS2 Gene Family AT5G09720 54.7 4.5e-72 268.9
Cone14ag0131 . 32 229 MRS2 Gene Family AT5G09720 60.7 7.7e-56 214.9
Cone4ag1110 . 1 223 MRS2 Gene Family AT5G09720 52.6 2.6e-51 199.9
Cone17ag0276 . 1 444 MRS2 Gene Family AT1G80900 78.7 1.8e-189 659.4
Cone11ag0946 . 1 441 MRS2 Gene Family AT1G80900 79.5 4.0e-189 658.3
Cone20ag1134 . 1 353 MRS2 Gene Family AT1G80900 79.4 3.6e-150 528.9
Cone9ag0537 . 35 423 MRS2 Gene Family AT1G80900 52.0 1.8e-104 377.1
Cone11ag1343 . 10 454 MRS2 Gene Family AT5G22830 67.3 1.0e-155 547.4
Cone18ag0237 . 33 445 MRS2 Gene Family AT5G22830 68.8 1.7e-150 530.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41