Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0238 ATGTCTCGTCGTGACCGTGACGGCCGTGTTGAATATGGCCAGGACCAGCCATTTCCGGCACTGGCTCAGAGTGGTAGAGGTGGAAGAGGCCGAAGTGGTGGCGGGAGAGGTACGGACTCCGGTGGTACTACTGCTGCTCCGGAGATCTCTACTGCCGCTGCATCGAGTTCTACTACTCCGTCTTCTGCTCTAGTCTCTGTTCCTTCTCTTTCAGGTGAGTTCGAGAAACTTACTTTACAGCCGGCTCAAGTTCTGCCTCCGTCGTCGTCCAAGCATCTGACTCACAGAAACAGACCGGGTTTTGGAACTGTTGGAAGACGAATAACTGTTCGAGCGAATCATTTTCCGGTGAAGGTTGGAGACGTTGATCTCCATCAGTACGATGTGTCGATAACACCTGAAGTTACGTCTAAGAAGGTCTGTAGAGATTTGATGCTTCAGCTGGAGAACTTGTATCGTGAATCTCTTCTAGGTGGGAGGAAACTAGCATATGACGGCAGGAAAAGTGTTTATACTGCTGCCCCTTTTCCTTTTTCCTCTAAGGACTTCGTGATCAAGTTAGTTGATAGTGATGATCATGGATCATCTACTTCAACAAGAAGAGAACGTGAATTCAAGGTGACTATCAAGTTTGCCTCGAAGCCAGACATTTGTCATCTTCAGCAGTTTTTACAGGGAAAACAGTTGGATGCACCACAAGAAACGATACAAGCTCTTGACGTAGTTCTTAGAGCAGCACCATCTCAAATCTATACTGTTGTAGGGAGGTCATTTTACTCGCTAAATGATCTGGGGCAAGGTGGAGAACTTGGAAATGGTGTGGAATATTGGAGGGGGTATTATCAAAGCCTTCGGCCGACTCAAATGGGACTTTCCCTTAATATTGATGTCTCATCCCGATCTTTTTATGAGCCTATAAGGGTATCAAATTTTGTTGCAAAGTATCTCAATCGAGATGTTACAAGGTCACTAGGTGATCTTGACAGGGTGAAGGTCAAAAAGGCACTAAGAGGAGTCAAGGTGAAACATATTCGTGGGCAGTATGCAAGAACATACAAAGTCACAGGAATAACAACTCTACCAATAAGCCAACTTACGTTCATAGATGATGAGAAGAATAAGATGTCAGTTGTGCAATACTTCCGGGAGAAATACAATATTGCACTAGAAAATGTATTTCTGCCTGCAATTCAGGCTGGAAGTGATTCGAAGCCCATTTATTTGCCCATGGATGGCTGTGAAATTGTAGAAGGACAGAGGTATACGAAGAAGTTGAATGACCGGCAAGTTAATAAATTATTGAAAGCAACTTGTCAACGTCCACCGGAGAGGGAAGCGAGTATTAAAATGATGGTTAAGCCCAATGACAAGATCCGAGACTGTCCTGTAAGAAAGGACTTCGTCATTGAAGTACAACAGGATCTAACTCTTGTTGATGCTCGAGTCTTACCTCCTCCAACGCTTAGGTATTCTGGTACAGGAGAAGCAATAGTTGAACCTGTTATGGGGCAGTGGAATATGACAAAACAGAAAATGATCAATGGCGGCAAATTAGAATACTGGACTTGTGTGAATTTCTCTTCATATGTGAAAGGAGGTTTGCAACAACAATTCTGTTCTTTATTGATCGATGTCTGTAAAAGAATGGGAATGGATGTTAATCCCACCCCTTTGATTCCCATACTTTCTGCTAATGCTAATTATACGGAAAGGGCATTAATACAAGTTCACAAACAGTCACTGGATAAACTCAAAAGTATGGGCCAAGAAGGAAAATGGCTTCAGCTCCTAATTGTAATTCTACCTGATGTTAGTGGGTCTTATGGCAAGGTAAAAAGAATGTGCGAGACAGAGTTAGGTATCGTCTCTCAATGCTGTGAACCTAAGCAAGTGCCAAAACTCAACAAGTTGTATTTTGAGAATTTGGCTCTTAAGATCAATGTGAAGGTTGGGGGCCGAAACGTGGTTTTAAATGATGCGATTCTGAAAAGAATTCCTTTTGTATCTGATTGCCCAACAATTATCTTTGGAGCCGATGTGACGCATCCACAACCTGGAGAGGATGCTAGCCCTTCAATTGCAGCTGTTGTGGCATCAATGGATTGGCCAGAGGTGAGTAAGTACAGAGGACTTTTTTCTGCTCAGACACACCGTGAAGAAATTATCAAAGATCTGTACATGACGTATACAGATCCGCAAAAGGGACTCGTACATGGAGGAATGATCAGGGAAATGTTCATGGCTTTTAGAAGATCAACTGGTCGTAAGCCAGAAAGAATTATATTCTACAGAGATGGTGTTAGTGAGGGTCAATTTAACCAGGTGTTGTTGTACGAGGTGCTTGCTATCAGAGAGGCATGTGCTTCCCTAGAACAAGGATACCAACCGCCTATCACCTTTGTGGTTGTCCAAAAACGGCACCATACACGCCTTTTCCCATCCGATCATAGAAACCGTAATCAGATGGACAAGAGTGGAAATATCCAACCAGGAACTGTTGTTGATACACAGATTTGCCATCCCACAGAATTCGATTTTTACCTTAATAGCCATGCTGGAATCCAGGGTACAAGTCGACCGACTCATTATCATGTTTTGTACGATGAAAACAACTTTGGAGCTGATGCCATGCAAACTCTAACATATAATTTGTGCTACACGTATGTAAGATGTACTCGATCCGTGTCCATAGTTCCTCCAGCTTATTATGCGCATTTAGCTGCTTCTCGGGCCCGTCATTATATCGATATGGACACATCAGATAGTGGTTCGATTAGTGGGACTAAGAATTTGGAGGTTCGCTCTCTTCCCGGTATCAAGGACAATGTGAAGAATGTAATGTTTTATTGCTGA 2853 43.18 MSRRDRDGRVEYGQDQPFPALAQSGRGGRGRSGGGRGTDSGGTTAAPEISTAAASSSTTPSSALVSVPSLSGEFEKLTLQPAQVLPPSSSKHLTHRNRPGFGTVGRRITVRANHFPVKVGDVDLHQYDVSITPEVTSKKVCRDLMLQLENLYRESLLGGRKLAYDGRKSVYTAAPFPFSSKDFVIKLVDSDDHGSSTSTRREREFKVTIKFASKPDICHLQQFLQGKQLDAPQETIQALDVVLRAAPSQIYTVVGRSFYSLNDLGQGGELGNGVEYWRGYYQSLRPTQMGLSLNIDVSSRSFYEPIRVSNFVAKYLNRDVTRSLGDLDRVKVKKALRGVKVKHIRGQYARTYKVTGITTLPISQLTFIDDEKNKMSVVQYFREKYNIALENVFLPAIQAGSDSKPIYLPMDGCEIVEGQRYTKKLNDRQVNKLLKATCQRPPEREASIKMMVKPNDKIRDCPVRKDFVIEVQQDLTLVDARVLPPPTLRYSGTGEAIVEPVMGQWNMTKQKMINGGKLEYWTCVNFSSYVKGGLQQQFCSLLIDVCKRMGMDVNPTPLIPILSANANYTERALIQVHKQSLDKLKSMGQEGKWLQLLIVILPDVSGSYGKVKRMCETELGIVSQCCEPKQVPKLNKLYFENLALKINVKVGGRNVVLNDAILKRIPFVSDCPTIIFGADVTHPQPGEDASPSIAAVVASMDWPEVSKYRGLFSAQTHREEIIKDLYMTYTDPQKGLVHGGMIREMFMAFRRSTGRKPERIIFYRDGVSEGQFNQVLLYEVLAIREACASLEQGYQPPITFVVVQKRHHTRLFPSDHRNRNQMDKSGNIQPGTVVDTQICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENNFGADAMQTLTYNLCYTYVRCTRSVSIVPPAYYAHLAASRARHYIDMDTSDSGSISGTKNLEVRSLPGIKDNVKNVMFYC 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1166908 1172426 - Conep18aG0024300.1 Cone18ag0238 457199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0238 950 Pfam Piwi domain 597 915 IPR003165 GO:0003676(InterPro)
Cone18ag0238 950 SMART DUF1785_2 252 305 IPR014811 -
Cone18ag0238 950 CDD Piwi_ago-like 462 915 IPR045246 -
Cone18ag0238 950 Pfam N-terminal domain of argonaute 106 243 IPR032474 -
Cone18ag0238 950 MobiDBLite consensus disorder prediction 1 65 - -
Cone18ag0238 950 Pfam Argonaute linker 1 domain 254 304 IPR014811 -
Cone18ag0238 950 Gene3D - 665 950 IPR036397 GO:0003676(InterPro)
Cone18ag0238 950 ProSiteProfiles Piwi domain profile. 596 916 IPR003165 GO:0003676(InterPro)
Cone18ag0238 950 Pfam Argonaute linker 2 domain 443 490 IPR032472 -
Cone18ag0238 950 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 98 922 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cone18ag0238 950 MobiDBLite consensus disorder prediction 37 65 - -
Cone18ag0238 950 FunFam Argonaute 10 482 658 - -
Cone18ag0238 950 FunFam protein argonaute 10-like 664 950 - -
Cone18ag0238 950 Pfam PAZ domain 316 433 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone18ag0238 950 SUPERFAMILY PAZ domain 302 453 IPR036085 GO:0005515(InterPro)
Cone18ag0238 950 SUPERFAMILY Ribonuclease H-like 591 916 IPR012337 -
Cone18ag0238 950 CDD PAZ_argonaute_like 305 416 - -
Cone18ag0238 950 Gene3D paz domain 300 421 - -
Cone18ag0238 950 ProSiteProfiles PAZ domain profile. 307 417 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cone18ag0238 950 Gene3D - 482 659 - -
Cone18ag0238 950 SMART Piwi_a_2 596 916 IPR003165 GO:0003676(InterPro)
Cone18ag0238 950 Pfam Mid domain of argonaute 500 559 IPR032473 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1341 Cone-Chr11:9823795 Cone18ag0238 Cone-Chr18:1166908 0 dispersed
Cone18ag0238 Cone-Chr18:1166908 Cone18ag0593 Cone-Chr18:2966035 0 dispersed
Cone11ag1340 Cone-Chr11:9820671 Cone18ag0238 Cone-Chr18:1166908 6.14E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0238 K11593 - csv:116403995 1193.72