Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0244 ATGGGTCAGATTCAGTACTCGGAGAAGTACTTCGATGATACTTTCGAGTATAGGCATGTGGTGCTTCCTCCTGAAGTGGCGAAACTGCTTCCGAAGAATCGCCTTCTATCTGAAAACGAATGGCGTGCAATAGGAGTCCAACAGAGCCGGGGATGGGTTCACTACGCTATTCATCGTCCTGAACCACATATCATGCTGTTCAGAAGGCCTTTGAATTATCAACAGCAGCAGGAAAACCAGGCTCATCAAGCTGTGGCTGCTAAGTGA 267 47.94 MGQIQYSEKYFDDTFEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAHQAVAAK 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1200438 1201523 + Conep18aG0024900.1 Cone18ag0244 457205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0244 88 SUPERFAMILY Cell cycle regulatory proteins 1 80 IPR036858 GO:0016538(InterPro)
Cone18ag0244 88 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538(InterPro)
Cone18ag0244 88 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Cone18ag0244 88 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 85 - GO:0000307(PANTHER)|GO:0007346(PANTHER)|GO:0019005(PANTHER)|GO:0019901(PANTHER)|GO:0042393(PANTHER)|GO:0043130(PANTHER)|GO:0061575(PANTHER)
Cone18ag0244 88 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538(InterPro)
Cone18ag0244 88 Gene3D - 1 84 IPR036858 GO:0016538(InterPro)
Cone18ag0244 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538(InterPro)
Cone18ag0244 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538(InterPro)
Cone18ag0244 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538(InterPro)
Cone18ag0244 88 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538(InterPro)
Cone18ag0244 88 SMART CKS_2 3 72 IPR000789 GO:0016538(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0502 Cone-Chr1:4879589 Cone18ag0244 Cone-Chr18:1200438 5.59E-54 wgd
Cone11ag1331 Cone-Chr11:9780307 Cone18ag0244 Cone-Chr18:1200438 1.51E-61 wgd
Cone18ag0244 Cone-Chr18:1200438 Cone5ag1270 Cone-Chr5:6065625 1.88E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0244 K02219 - gmx:100786340 170.244