Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0268 ATGCAAATGGTTGTTTCCTCATTTGAATCCGTATCAGGGCTTAGTTCGGTCACTCCGTACATTTCATTGGCTCTCGGGACAATTTCGAAGCACTTTTGGTGTCTGAGAAATGCAATTTTGGAACAGCTAAGACACGATAAGAAAGCATCGGGCGAGGATCATGTTATTATTTCATCCCCCACCGCCAAAACAAGTGGCAGCAATCTTGGTGATACTAATCCAGCCCGATTAAAATACATGGATCAAAGCCATGTTATTACAAAGCACAACAAATCTAGTGGGGTTAACAACATTGGGTATCTTGAAACACAAGCAGTTCGGAGGCCTCAACGAGGCTTACCGGAACGTTCCGTGGCCATTCTTCGGGCTTGGCTCTTTGAACATTTTCTTCACCCGTACCCGACTGATACGGATAAGCATATGTTAGCCACTCAAACGGGCCTAACACGTAACCAGGTATCAAATTGGTTCGTCAATGCTCGGGTGCGCGTTTGGAAAACGATGGTTGAAGAAATACATGCGCTAGAAACCAAAGGTGGCCTTGCCGAACCAAACCAAGATCATTCAAGAAAGAATGAAATTGGCTCCGGAGTAGAAGGTACTACTAGGTGGTGGATACATGGCGATTCTAGAGAATCAAAAAATCAGAGTGTGAATTTCCTTAGGGGTCAATATCCTAGAGAGACAATTTCTGAACACCCGTGGACCCGAGAAAAGCGATTGAGATTAGATGGTCATGGAGACCATTTGAATATGATGGATGGGGCATTGACTAGTTTCATGCCATGTCAGCAAACCGGCATCGATTTAGGAGGTCTCGGAGCTGTGTCTCTAACATTGGGCCTTAGGCATCGAGTGGAGGGTGCCTCGCCACATCAACAGTTCCAACAAGAAGACTGTCATATTTTGCGACAATATGGATCAAGTCAAATGATTCATGATTATGCGGGGTGA 954 45.07 MQMVVSSFESVSGLSSVTPYISLALGTISKHFWCLRNAILEQLRHDKKASGEDHVIISSPTAKTSGSNLGDTNPARLKYMDQSHVITKHNKSSGVNNIGYLETQAVRRPQRGLPERSVAILRAWLFEHFLHPYPTDTDKHMLATQTGLTRNQVSNWFVNARVRVWKTMVEEIHALETKGGLAEPNQDHSRKNEIGSGVEGTTRWWIHGDSRESKNQSVNFLRGQYPRETISEHPWTREKRLRLDGHGDHLNMMDGALTSFMPCQQTGIDLGGLGAVSLTLGLRHRVEGASPHQQFQQEDCHILRQYGSSQMIHDYAG 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1291051 1292598 + Conep18aG0027500.1 Cone18ag0268 457229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0268 317 SUPERFAMILY Homeodomain-like 107 172 IPR009057 -
Cone18ag0268 317 ProSiteProfiles 'Homeobox' domain profile. 104 167 IPR001356 GO:0003677(InterPro)
Cone18ag0268 317 FunFam BEL1-like homeodomain protein 9 110 172 - -
Cone18ag0268 317 Gene3D - 110 172 - -
Cone18ag0268 317 SMART HOX_1 107 171 IPR001356 GO:0003677(InterPro)
Cone18ag0268 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 193 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone18ag0268 317 Pfam Associated with HOX 1 39 IPR006563 -
Cone18ag0268 317 CDD homeodomain 107 168 IPR001356 GO:0003677(InterPro)
Cone18ag0268 317 Pfam Homeobox KN domain 124 163 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0268 Cone-Chr18:1291051 Cone8ag0088 Cone-Chr8:468633 1.87E-50 dispersed
Cone18ag0268 Cone-Chr18:1291051 Cone11ag1311 Cone-Chr11:9683624 4.71E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45143 PF00487 FA_desaturase 2.10E-33 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0268 - - - 0.0