Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0268 | ATGCAAATGGTTGTTTCCTCATTTGAATCCGTATCAGGGCTTAGTTCGGTCACTCCGTACATTTCATTGGCTCTCGGGACAATTTCGAAGCACTTTTGGTGTCTGAGAAATGCAATTTTGGAACAGCTAAGACACGATAAGAAAGCATCGGGCGAGGATCATGTTATTATTTCATCCCCCACCGCCAAAACAAGTGGCAGCAATCTTGGTGATACTAATCCAGCCCGATTAAAATACATGGATCAAAGCCATGTTATTACAAAGCACAACAAATCTAGTGGGGTTAACAACATTGGGTATCTTGAAACACAAGCAGTTCGGAGGCCTCAACGAGGCTTACCGGAACGTTCCGTGGCCATTCTTCGGGCTTGGCTCTTTGAACATTTTCTTCACCCGTACCCGACTGATACGGATAAGCATATGTTAGCCACTCAAACGGGCCTAACACGTAACCAGGTATCAAATTGGTTCGTCAATGCTCGGGTGCGCGTTTGGAAAACGATGGTTGAAGAAATACATGCGCTAGAAACCAAAGGTGGCCTTGCCGAACCAAACCAAGATCATTCAAGAAAGAATGAAATTGGCTCCGGAGTAGAAGGTACTACTAGGTGGTGGATACATGGCGATTCTAGAGAATCAAAAAATCAGAGTGTGAATTTCCTTAGGGGTCAATATCCTAGAGAGACAATTTCTGAACACCCGTGGACCCGAGAAAAGCGATTGAGATTAGATGGTCATGGAGACCATTTGAATATGATGGATGGGGCATTGACTAGTTTCATGCCATGTCAGCAAACCGGCATCGATTTAGGAGGTCTCGGAGCTGTGTCTCTAACATTGGGCCTTAGGCATCGAGTGGAGGGTGCCTCGCCACATCAACAGTTCCAACAAGAAGACTGTCATATTTTGCGACAATATGGATCAAGTCAAATGATTCATGATTATGCGGGGTGA | 954 | 45.07 | MQMVVSSFESVSGLSSVTPYISLALGTISKHFWCLRNAILEQLRHDKKASGEDHVIISSPTAKTSGSNLGDTNPARLKYMDQSHVITKHNKSSGVNNIGYLETQAVRRPQRGLPERSVAILRAWLFEHFLHPYPTDTDKHMLATQTGLTRNQVSNWFVNARVRVWKTMVEEIHALETKGGLAEPNQDHSRKNEIGSGVEGTTRWWIHGDSRESKNQSVNFLRGQYPRETISEHPWTREKRLRLDGHGDHLNMMDGALTSFMPCQQTGIDLGGLGAVSLTLGLRHRVEGASPHQQFQQEDCHILRQYGSSQMIHDYAG | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 1291051 | 1292598 | + | Conep18aG0027500.1 | Cone18ag0268 | 457229 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0268 | 317 | SUPERFAMILY | Homeodomain-like | 107 | 172 | IPR009057 | - | |
Cone18ag0268 | 317 | ProSiteProfiles | 'Homeobox' domain profile. | 104 | 167 | IPR001356 | GO:0003677(InterPro) | |
Cone18ag0268 | 317 | FunFam | BEL1-like homeodomain protein 9 | 110 | 172 | - | - | |
Cone18ag0268 | 317 | Gene3D | - | 110 | 172 | - | - | |
Cone18ag0268 | 317 | SMART | HOX_1 | 107 | 171 | IPR001356 | GO:0003677(InterPro) | |
Cone18ag0268 | 317 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 193 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cone18ag0268 | 317 | Pfam | Associated with HOX | 1 | 39 | IPR006563 | - | |
Cone18ag0268 | 317 | CDD | homeodomain | 107 | 168 | IPR001356 | GO:0003677(InterPro) | |
Cone18ag0268 | 317 | Pfam | Homeobox KN domain | 124 | 163 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone18ag0268 | Cone-Chr18:1291051 | Cone8ag0088 | Cone-Chr8:468633 | 1.87E-50 | dispersed | |
Cone18ag0268 | Cone-Chr18:1291051 | Cone11ag1311 | Cone-Chr11:9683624 | 4.71E-180 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45143 | PF00487 | FA_desaturase | 2.10E-33 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0268 | - | - | - | 0.0 |