Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0271 ATGGAAGCAATAAAAGAAAAATTACAAAACGGCCATGTGGATAATGTCATGACACAAAAAAGCATGTCCAGTAATGACCCATTGAGTTGGGGATTAGCGGCGGATTCTCTAAAGGGTAGCCATTTAGAGGAGGTGAAGAGGATGGTCAAGGATTATAGGAAGAAAGTAGTGAAGCTTGGGGGCGAAAGTTTGACCGTTGGTCAAGTCGCGGCCGTGGCGGCAGCAGAGGCAGTGGTGGTGGAGCTGGAGGAGTCGGCAAGGGCGGCCGTGGAGGAGAGTAGTAAATGGGTGGTGGAGAGTGCAGAGAGAGGGATAGATAGTTATGGGGTCACTACTGGATTCGGTGCAACGTCTCATAGGAGGACTAAGCAAGGGGGTGCTTTACAGAATGAGCTGATTAGATTCTTGAATGCTGGAATCTTTGGAACTGGAAAAGAAGCTGCTACTCACACAATGCCAAAGACAACTACAAGAGCTGCAATGCTAGTTAGAATCAACACTCTTCTCCAAGGCTACTCAGGCATCAGATTTGAGATCCTTGAAGCCATAGCCAAGCTTCTTAACCACAACATAACACCATGTTTGCCCTTAAGAGGCTCCATTTCCGCCTCAGGTGATTTGGTCCCTTTTGCTTACATTGCAGGCCTCTTAACCGGCAGGCCCAATTCCAAAGCCATTGGACCAACGGGCGAGCCCGTGGATGCCCACGAGGCCTTAAGGCTAGCCAGTATCGATTCCGGTTTCTTCCAGTTGCAACCAAAGGAGGGCCTTGCACTTGTTAACGGCACGGGAGTTGGGTCTGGGTTAGCTTCTATAGTCCTTTTTGAAGCAAACATTTTGATTGTTTTATCCGAAATCTTATCGGCAATTTTCGCTGAAACTATGGGAGGAAAGCCCGAGTTTACAAACCATTTGACTCATAAGCTGAAGCATCATCCGGGACAAATTGAAGCCGCAGCTATAATGGAATACATTTTGGATGGGAGCTCTTATGTTAAAGAAGCAAAAAAGTTGCATGGGATCAATCCTCTCCAAAAGCCGAAACAAGATCGATATGCCCTCCGTACTTCCCCGCAATGGTTAGGTCCTCAGATCGAAGTTATCCGAATGTCGACAAAGTCCATTGAGAGGGAGATTAACTCAGTCAATGATAATCCATTGATTGATGTCTCTAGGAATAAGGCAATTCATGGTGGGAATTTTCAAGGAACCCCAGTTGGGGTCTCAATGGATAACACAAGATTAGCTGTAGCTTCGGTTGGAAAACTCATGTTTGCTCAACTGTCCGAGCTTGTTAACGAATTTTACAATAATGGGTTGCCTTCAAATCTTTCGGGAGGGAGAAATCCAAGCTTGGATTACGGGTTTAAAGGAGCCGAAATCGCTATGGCGGCGTATTGTTCTGAACTCCAGTTTCTGGCTAACCCTGTTACCAATCATGTCCAAAGTGCAGAGCAACACAATCAAGATGTGAATTCATTGGGTTTGATCTCTTCGGGGAAAGCGGCAGAAGCCGTAGACATCTTGAAGCTCATGACTTCTACTTTTTTGGTGGCACTTTGTCAAGCTATAGATTTGAGGCATTTGGAGGAAAACTTGAAGAATGCTGTGAAGAATAGTGTGAGCCAAGTGGCGAAGAAGGTACTAACAATGGGAGTCAATGGAGCGCTTCATCCTTCTAGATTTTGTGAGAAAGATTTGCTCAAAGTTGTGGATTGTGAACATGTTTTTGGTTATATTGATGACTCGTGCAATGCTTCTTACCCACTAATGCAAAAACTAAGGCAAGTGCTTGTTGAACATGCATTGGTGGACAGTGAAGATTTGAGTAGTCCTAGTGGGTCAATATTTTTGAAGATTGGAGCTTTTGAGGAGGAATTGAAGACCCTTTTGCCTAAAGAAATTGAGGCTACAAGAGTTGGGTTTGAAAATAATGGTCTAGAAATTGGTAATAGAATTAAGGAGTGTAGGTCTGATCCATTTTACAGATTTGTGAGGGAAGAGCTAGGGGCTGAGTTTCTGACTGGAGAGAAACTGAAGTCCCCAGGAGAGGAGTTTGATAAGGTCTTCTCAGCTATTTGTGAGGGTAAGATTATCGACCCAATGCTCGAATGTCTTAAAGATTGGGATGGTAATCCTCTCGCAATATGTTAG 2154 44.61 MEAIKEKLQNGHVDNVMTQKSMSSNDPLSWGLAADSLKGSHLEEVKRMVKDYRKKVVKLGGESLTVGQVAAVAAAEAVVVELEESARAAVEESSKWVVESAERGIDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGTGKEAATHTMPKTTTRAAMLVRINTLLQGYSGIRFEILEAIAKLLNHNITPCLPLRGSISASGDLVPFAYIAGLLTGRPNSKAIGPTGEPVDAHEALRLASIDSGFFQLQPKEGLALVNGTGVGSGLASIVLFEANILIVLSEILSAIFAETMGGKPEFTNHLTHKLKHHPGQIEAAAIMEYILDGSSYVKEAKKLHGINPLQKPKQDRYALRTSPQWLGPQIEVIRMSTKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPVGVSMDNTRLAVASVGKLMFAQLSELVNEFYNNGLPSNLSGGRNPSLDYGFKGAEIAMAAYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSGKAAEAVDILKLMTSTFLVALCQAIDLRHLEENLKNAVKNSVSQVAKKVLTMGVNGALHPSRFCEKDLLKVVDCEHVFGYIDDSCNASYPLMQKLRQVLVEHALVDSEDLSSPSGSIFLKIGAFEEELKTLLPKEIEATRVGFENNGLEIGNRIKECRSDPFYRFVREELGAEFLTGEKLKSPGEEFDKVFSAICEGKIIDPMLECLKDWDGNPLAIC 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1311305 1313980 - Conep18aG0027800.1 Cone18ag0271 457232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0271 717 FunFam Phenylalanine ammonia-lyase 264 614 - -
Cone18ag0271 717 Coils Coil 42 62 - -
Cone18ag0271 717 CDD PAL-HAL 85 527 IPR001106 -
Cone18ag0271 717 Gene3D Fumarase/aspartase (Central domain) 265 711 - -
Cone18ag0271 717 PANTHER HISTIDINE AMMONIA-LYASE 21 717 IPR001106 GO:0016841(PANTHER)
Cone18ag0271 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824(InterPro)
Cone18ag0271 717 Coils Coil 72 92 - -
Cone18ag0271 717 Gene3D - 530 651 IPR023144 -
Cone18ag0271 717 FunFam Phenylalanine ammonia-lyase 530 651 - -
Cone18ag0271 717 Gene3D - 17 263 IPR024083 -
Cone18ag0271 717 NCBIfam phenylalanine ammonia-lyase 26 707 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Cone18ag0271 717 FunFam Phenylalanine ammonia-lyase 17 263 - -
Cone18ag0271 717 MobiDBLite consensus disorder prediction 1 25 - -
Cone18ag0271 717 Pfam Aromatic amino acid lyase 64 541 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0271 Cone-Chr18:1311305 Cone1ag1357 Cone-Chr1:56574402 0 dispersed
Cone11ag1309 Cone-Chr11:9665820 Cone18ag0271 Cone-Chr18:1311305 1.98E-129 transposed
Cone11ag1308 Cone-Chr11:9664209 Cone18ag0271 Cone-Chr18:1311305 2.11E-152 wgd
Cone13ag1260 Cone-Chr13:9546345 Cone18ag0271 Cone-Chr18:1311305 0 wgd
Cone18ag0271 Cone-Chr18:1311305 Cone19ag1247 Cone-Chr19:8569861 0 wgd
Cone18ag0271 Cone-Chr18:1311305 Cone5ag0346 Cone-Chr5:1476230 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0271 K10775 - vvi:100241575 1115.14