Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0273 ATGGGTTATAATAATTCAAGATCCGTAAGATTCCGAGATGATGATGAATCATTAAAGCTTCCTACTAAGCTCAAGTTCAATATAGACGGGACGACTATAGCGGACTCGAGCAATGGGAAAGATGAGAGTCCTGTTTTATGGAAAGCCGGGAAATCCTTGAAAGCTAAAGTATTGTCTAGAGTCTTTTCTGAGGATTATGAGAGAGTGAAGAAGAAGATCTTGGACCCTAGAGGGGAAAAGATAAGGAGATGGAATAAGATCTTTCTAGTAGCTTCTTTAGTTTCTTTGTTTGTAGATCCTCTATTCTTTTACTTGCCAGTTGTCTCCGATGAGATGTGCATTCGAATAGGGTTCCGTCTTGAAGTTATTCTTACAACTATAAGATCCATAGCCGATGTTTTCTACTTGATCCATATCCTTATTAGATTCCGAACTGCTTATGTCGCACCTTCTTCCCGTGTTTTTGGAAGAGGAGAGATTGTCATAGACTCTTCCAAGATCGCCTTAAGGTATCTTCGCCAGGGTTTCTGGATCGACCTCGTTGCTGCTCTTCCCCTCCCACAGGTTGTGATTTGGATTGTCATTCCGAGCCTAGGTGGTTCTACAATGACAAACACTAAGAACTTCCTCCGGTTCATACTTATATTTCAGTATTTCCCAAGACTCTTCCTCATATTCCCTCTCTCCGCACAAATCGTTAAGGCAGCTGGTGTTGTCACACAAACGGCTTGGGCCGGTGCTGCTTATAATCTCATGCTTTACATGTTGGCAAGTCATGTTTTAGGAGCTTGTTGGTACCTTCTATCGATCGAACGGCAGGAAGATTGCTGGAGGAAAGTATGTGAGCTCAATCCCCAATCTTGTAATTATCATTTCTTCGATTGCAATGAAGTTGGCAAAACTAATAGGAGCTCTTGGTTTAAATCGAGTAATGTTACAAACTTATGCAACCCGGATGATAGCTTCTATTCCTTTGGAATATACGGTGATGCAACGACATATCATGTCACGACATCTACATTCTTCAAAAAGTACTTCTACTGTCTCTGGTGGGGCCTCAAGAATCTAAGTTCCTTAGGACAGAATCTTGCTACAAGCACTTATGTTGGAGAAATCGCATTCGCCATAATTGTTGCAACTCTCGGACTTGTTCTCTTTGGATTGCTCATTGGTAACATGCAAACATACCTCCAATCAACAACGGTCCGATTAGAAGAATGGAGGATAAAGAGAACAGATACGGAACAATGGATGCATCACCGTCAACTACCTCCAGAACTAAAACAATCCGTACGGAAATATGACCAGTACAAGTGGGTAGCAACTCGAGGAGTTGATGAGGAAGCTCTTCTCAAAGGCCTTCCTATGGATCTCAGAAGAGACATTAAACGCCACCTTTGTCTCGACCTTGTCCGAGGAGTCCCCTTGTTTGATCAAATGGATGAGAGAATGCTTGATGCGATATGTGAACGGCTTAAACCGGCTCTATACACGGAAGGCACGTTTCTTGTACGAGAAGGGGACCCCGTCAATGAAATGCTGTTTATTATCCGAGGCCACCTTGACTCTTACACTACTAATGGGGGACGGACTGGGTTCTTTAACTCATGTCGGATCGGACCCGGTGACTTTTGTGGCGAGGAGCTTCTAACGTGGGCCCTGGACCCACGTCCAGTTATCATCATACCCTCGTCTACCCGTACGGTCAAAGCTATTTCGGAAGTTGAGGCATTTGCTCTCATTGCAGAGGACTTAAAATTCGTAGCCTCACAATTTAGACGGCTTCATAGTAAACAACTCCGGCACAAGTTCCGGTTTTACTCACACCAGTGGAGAACGTGGGCTGCATGTTTCGTACAGGCAGCCTGGCGCAGGTATAAGAGACGGAAGGAAGCGTCGAAGCTCAGGGCTAGAGAGAAGTCTGTTGTTTCTGATGCGGTGGATTCGGCCCCACCACCTTTTTCGTATGTCTCGAGGTTGGCGGCTAGTTCTAGGTTGGCGGGAACTACGAGGAGGGTTGTTACTATGACACGTTCGGGTTCGGAATCCGAGGTTGTCAGCTCATTGCAAAAACCGGAAGAGCCGGACTTTTCGGTGGTTGAATGA 2106 44.97 MGYNNSRSVRFRDDDESLKLPTKLKFNIDGTTIADSSNGKDESPVLWKAGKSLKAKVLSRVFSEDYERVKKKILDPRGEKIRRWNKIFLVASLVSLFVDPLFFYLPVVSDEMCIRIGFRLEVILTTIRSIADVFYLIHILIRFRTAYVAPSSRVFGRGEIVIDSSKIALRYLRQGFWIDLVAALPLPQVVIWIVIPSLGGSTMTNTKNFLRFILIFQYFPRLFLIFPLSAQIVKAAGVVTQTAWAGAAYNLMLYMLASHVLGACWYLLSIERQEDCWRKVCELNPQSCNYHFFDCNEVGKTNRSSWFKSSNVTNLCNPDDSFYSFGIYGDATTYHVTTSTFFKKYFYCLWWGLKNLSSLGQNLATSTYVGEIAFAIIVATLGLVLFGLLIGNMQTYLQSTTVRLEEWRIKRTDTEQWMHHRQLPPELKQSVRKYDQYKWVATRGVDEEALLKGLPMDLRRDIKRHLCLDLVRGVPLFDQMDERMLDAICERLKPALYTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPVIIIPSSTRTVKAISEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKEASKLRAREKSVVSDAVDSAPPPFSYVSRLAASSRLAGTTRRVVTMTRSGSESEVVSSLQKPEEPDFSVVE 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1321386 1325074 + Conep18aG0028000.1 Cone18ag0273 457234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0273 701 FunFam Cyclic nucleotide-gated ion channel 1 474 592 - -
Cone18ag0273 701 MobiDBLite consensus disorder prediction 678 701 - -
Cone18ag0273 701 Gene3D Jelly Rolls 474 594 IPR014710 -
Cone18ag0273 701 CDD CAP_ED 476 607 IPR000595 -
Cone18ag0273 701 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 56 662 - -
Cone18ag0273 701 Gene3D - 93 400 - -
Cone18ag0273 701 ProSiteProfiles cAMP/cGMP binding motif profile. 476 573 IPR000595 -
Cone18ag0273 701 SUPERFAMILY Voltage-gated potassium channels 76 398 - -
Cone18ag0273 701 Pfam Cyclic nucleotide-binding domain 497 562 IPR000595 -
Cone18ag0273 701 SMART cnmp_10 476 607 IPR000595 -
Cone18ag0273 701 Pfam Ion transport protein 84 403 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone18ag0273 701 PRINTS EAG/ELK/ERG potassium channel family signature 256 266 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone18ag0273 701 PRINTS EAG/ELK/ERG potassium channel family signature 139 148 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone18ag0273 701 PRINTS EAG/ELK/ERG potassium channel family signature 371 382 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone18ag0273 701 PRINTS EAG/ELK/ERG potassium channel family signature 439 446 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone18ag0273 701 PRINTS EAG/ELK/ERG potassium channel family signature 345 362 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone18ag0273 701 PRINTS EAG/ELK/ERG potassium channel family signature 389 398 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cone18ag0273 701 FunFam Cyclic nucleotide-gated ion channel 1 403 467 - -
Cone18ag0273 701 Gene3D Helix hairpin bin 403 467 - -
Cone18ag0273 701 ProSiteProfiles IQ motif profile. 612 641 - -
Cone18ag0273 701 SUPERFAMILY cAMP-binding domain-like 406 602 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0026 Cone-Chr15:198240 Cone18ag0273 Cone-Chr18:1321386 2.88E-57 dispersed
Cone18ag0273 Cone-Chr18:1321386 Cone2ag0610 Cone-Chr2:3700486 1.25E-269 dispersed
Cone11ag1306 Cone-Chr11:9650037 Cone18ag0273 Cone-Chr18:1321386 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0273 K05391 - csv:101210775 1103.58