Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0280 ATGGCCGCCATGGCGGTAGCTCAACACAGAGAAAGTAGCAGTGGGAGTATCAACAGACATCTTGATAATACTGGAAAATACGTTCGATACACAGCAGAGCAAGTTGAAGCACTCGAACGAGTTTATGCAGAGTGTCCAAAACCAAGTTCTTTGCGGAGGCAGCAGCTGATCAGGGAGTGCCCCATTCTTTCCAACATAGACCCCAAGCAGATCAAAGTTTGGTTTCAGAATCGAAGGTGTAGAGAGAAGCAGAGGAAAGAGGCTTCTCGTCTACAATCAGTTAACCGGAAATTGACAGCTATGAACAAGCTGTTAATGGAGGAGAATGATCGATTGCAGAAACAAGTGTCTCAGCTCGTGTGTGAAAATGGGTTTATGCGGCAACATGTGCAACCGGGTTCTGCAGCAAATACAGATGCGAGTTGTGACTCTGCCGTTACCACTCCTCAGCATACTCTTAGAGATGCAAATAATCCTGCTGGACTCCTCTCCATTGCAGAGGAAATCTTGGCAGAGTTCCTTTCAAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCAGTTGGAATCTTTGCCATTTCACAAAGTTGTCGTGGATTGGCAGCTCGAGCCTGCGGCCTTGTAAGTTTAGAGCCAGCCAAGATTGCAGAGATCCTTAAAGATCGCCCATCTTGGTTCAGGGATTGCCGGAGCCTCGAAGTTTTTACCATGTTTCCTGCTGGAAATGGAGGGACCATTGAACTCGTTTACACACAGGTATATGCTCCGACTACTCTGGCTTCTGCCAGGGATTTCTGGACTCTTAGATACACTACAACTTTGGACAATGGGAGCCTTGTGGTTTGTGAGAGATCTCTGTCAGGTTCTGGTGCTGCTCCTAATTCAGCTGCTGTGGCTCAGTTTGTGAGAGCAGAAATGCTTCCGAGTGGTTATTTAATTCGCCCATGTGAGGGTGGAGGGTCAATAATTCATATTGTAGACCACATGAATCTTGAGGCATGGAGTGTACCAGAAGTTTTGCGACCACTCTATGAGTCATCAAAAGTGGTTGGTCAGAGAATGACCATAGCTGCTCTGCGTTATATCAGGCAGATAGCTCAGGAATTCAGTGGTGAAGTGGTGTATGGTTTGGGCAGACAGCCAGCTGTTCTTCGAACTTTTAGCCAGAGATTGAGCAGGGGCTTTAATGATGCAGTCAATGGATTTAATGATGATGGCTGGTCATTGATAAATAACTGTGATGGTGCCGAGGATGTGATGCTTGCTGTAAATTCAACCAAGAATTTGAGCACACCCTCTAATCCTCTGAATTCTTTTATGTTCCTTGGAGGGATTATCTGCGCAAAGGCTTCCATGCTTCTCCAAAATGTTCCTCCTGCTTTACTGGTTCGCTTCTTGAGGGAACACCGCTCAGAGTGGGCTGATTTCAATATTGATGCTTATTCTGCTACATCCCTGAAAGCTGGTTCATATAATTATCCTGGGATGAGGCCAACAAGGTTTACTGGGAGCCAAACCATCATGCCACTTGGCCACACAATTGAACATGAAGAGTTGCTCGAAGTTGTTCGACTAGAAGGCCACTCTCTTGCACAAGCAGATTGTTTTGCGTCAGGGGATATTCATCTCTTGCAGGTATGTCGTGGAATAGATGACAATGCTGTTGGAGCTTGTTCGGAGCTTATATTTGCTCCAATTGACGAAATGTTTCCAGATGATGCCCCTTTGCTTCCTTCTGGTTTCCGGATCATCCCAGTGGATTCCAAATCAGGTGAATCGAAGGAAACTGTGACGGCACATCATCAGACTTTGGATCTGACATCTAGTCTTGAAGTTGGCTCAGCCACAAACCAAACTTCAGGGGAGATGTCACCTTGTCAGAATTCTAGATCCGTCTTAACTATTGCGTTCCAGTTTCCTTTCGAGAGCAGCTTGCAGGATAATGTTGCAACAATGGCAAGACAGTATGTTCGGAGTGTGATAACTTCTGTGCAGAGGGTTGCTTTGGCCATATCTCCCTCTGGATCTATCCCAGCCTTTGGACCAAAATTATCTCCATGCTCCCCAGAAGCACTCACTCTGGCGAACTGGATCTGCCAGAGCTATAGTTACCATCTGGGAGCAGAATTGCTAAGACTAGATCTGGTGGGAGATGATGGAGTTTTGAAACATCTGTGGAATCTTCCAGATGCCATTTTGTGCTGCTCATTGAAGTCACAGCCGGTGTTCATGTTTGCAAATCAAGCTGGGCTTGACATGTTGGAAACAACCTTAGTTGCTTTACAAGACATCACTCTAGATAAGATATTTGATGAATCTGGACGAAAAGCACTTTTTGGTGAATTTGCAAAGCTAATGCAGCAGGGTTTTGCCTACTTGCCGGCCGGAATTTGCATGTCTTCAATGGGCCGCCATGTTTCATATGAACAAGCTGTTGCATGGAAAGTAATTGTGGCAGAGGAGGACACAGTTCATTGTTTGGCCTTCTCCTTCATAAACTGGTCCTTCGTGTGA 2541 46.04 MAAMAVAQHRESSSGSINRHLDNTGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIDPKQIKVWFQNRRCREKQRKEASRLQSVNRKLTAMNKLLMEENDRLQKQVSQLVCENGFMRQHVQPGSAANTDASCDSAVTTPQHTLRDANNPAGLLSIAEEILAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCRGLAARACGLVSLEPAKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQVYAPTTLASARDFWTLRYTTTLDNGSLVVCERSLSGSGAAPNSAAVAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLYESSKVVGQRMTIAALRYIRQIAQEFSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINNCDGAEDVMLAVNSTKNLSTPSNPLNSFMFLGGIICAKASMLLQNVPPALLVRFLREHRSEWADFNIDAYSATSLKAGSYNYPGMRPTRFTGSQTIMPLGHTIEHEELLEVVRLEGHSLAQADCFASGDIHLLQVCRGIDDNAVGACSELIFAPIDEMFPDDAPLLPSGFRIIPVDSKSGESKETVTAHHQTLDLTSSLEVGSATNQTSGEMSPCQNSRSVLTIAFQFPFESSLQDNVATMARQYVRSVITSVQRVALAISPSGSIPAFGPKLSPCSPEALTLANWICQSYSYHLGAELLRLDLVGDDGVLKHLWNLPDAILCCSLKSQPVFMFANQAGLDMLETTLVALQDITLDKIFDESGRKALFGEFAKLMQQGFAYLPAGICMSSMGRHVSYEQAVAWKVIVAEEDTVHCLAFSFINWSFV 846
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1361069 1367020 - Conep18aG0028700.1 Cone18ag0280 457241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0280 846 ProSiteProfiles START domain profile. 155 383 IPR002913 GO:0008289(InterPro)
Cone18ag0280 846 SMART HOX_1 23 89 IPR001356 GO:0003677(InterPro)
Cone18ag0280 846 Pfam MEKHLA domain 702 845 IPR013978 -
Cone18ag0280 846 Pfam START domain 165 373 IPR002913 GO:0008289(InterPro)
Cone18ag0280 846 FunFam Homeobox-leucine zipper protein REVOLUTA 26 81 - -
Cone18ag0280 846 CDD START_ArGLABRA2_like 159 375 - -
Cone18ag0280 846 SUPERFAMILY Bet v1-like 164 376 - -
Cone18ag0280 846 MobiDBLite consensus disorder prediction 1 20 - -
Cone18ag0280 846 Gene3D - 201 379 IPR023393 -
Cone18ag0280 846 Gene3D - 19 93 - -
Cone18ag0280 846 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 846 IPR044830 GO:0003700(InterPro)
Cone18ag0280 846 Coils Coil 91 122 - -
Cone18ag0280 846 CDD bZIP 78 117 - -
Cone18ag0280 846 Pfam Homeodomain 26 84 IPR001356 GO:0003677(InterPro)
Cone18ag0280 846 SUPERFAMILY Homeodomain-like 23 88 IPR009057 -
Cone18ag0280 846 CDD homeodomain 26 86 IPR001356 GO:0003677(InterPro)
Cone18ag0280 846 ProSiteProfiles 'Homeobox' domain profile. 21 85 IPR001356 GO:0003677(InterPro)
Cone18ag0280 846 SMART START_1 164 374 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0280 Cone-Chr18:1361069 Cone1ag0299 Cone-Chr1:2187418 0 dispersed
Cone1ag0733 Cone-Chr1:6795882 Cone18ag0280 Cone-Chr18:1361069 0 wgd
Cone11ag1301 Cone-Chr11:9613529 Cone18ag0280 Cone-Chr18:1361069 0 wgd
Cone18ag0280 Cone-Chr18:1361069 Cone5ag1233 Cone-Chr5:5706683 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45146 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0280 K09338 - vvi:100243208 1446.03