Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0291 ATGATGTCCGAAATGGATCATCCTGCCCTCTCAACTCCTTCCCTCATCAGTATTAATGGTTTTGTTGCTCAAGAAACAAACCCCAATTCAACCATGAGAAACCCTAATCCAAACCCAATCAAGAAGAAGAGAAATTTACCAGATCCAGGCGCAGAAGTCATAGCCTTATCACCAAAATCACTTATGGCTACGAACCGATTCATTTGCGAAATTTGCAACAAGGGTTTTCAAAGGGACCAGAACTTACAACTACACCGGAGAGGTCACAACCTTCCGTGGAAGCTCCGGCAAAGATCGAACAAAGAAGTGGTTCGGAAAAAGGTCTATGTATGCCCGGAAAAGAGTTGCGTTCATAACCATCCTTCCCGGGCTCTAGGCGATCTCACCGGAGTAAAGAAGCATTATAGTAGAAAACATGGTGAGAAGAAGTGGAAGTGTGAGAAATGTTCGAAGAAATACGCTGTTCAGTCGGATTGGAAGGCACATAGTAAGATTTGTGGGACTAGAGAGTATAAATGTGACTGTGGCACTATCTTTTCCAGGAAGGATAGCTATATTACCCACAGAGCATTTTGTGATGCATTGGCCGAAGAAAGTGGTAGGTTCAATCCGATTTCGTCATCTCTCGATCAAACCTTGATGAGAAACAACTTTATAAATGGGACCGCTGCTGCACTTTCAAATCCTCAAGGAACCATAAATGTTCCTCATCGATTCAATCCTCAAGTACCTTTTCAACCCACAGATCATCATTTCATTGCGAGCTCATCATCAATGGCTCCCAACTTCAATATGAGTTCTACCACTACTGCTACTAATTCAGATATTGGTCAAAAGCCAACAGTTCAGTTTCCCCTCTGGACTGACCCACCGAGTTCTACCCCCTTAAATTTCCCTCATCATGAGTTAATGCAATCATCGTCATCATTAAATATTACTCCTATGAGTAATAATATCTTTGGATCATCTTCTGTAAGTGCTACACAATGGCTTAGCAATCTCTCTATGTCGCCATTAATGGCTCGAGGAGGAGTACTAAAAGAGGAAGAAGAAGAAGAAGATCAAGACAGCATGAATAATGATTCATTGTATTCTAGTACCAATCACATGTCGGCCACCACGCTTTTGCAGAAATCAGCTCATGGGACCGACAACGTCATCCACTGCCGAATTACCGGCTTTCAATGGGATTAG 1194 42.55 MMSEMDHPALSTPSLISINGFVAQETNPNSTMRNPNPNPIKKKRNLPDPGAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVVRKKVYVCPEKSCVHNHPSRALGDLTGVKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSYITHRAFCDALAEESGRFNPISSSLDQTLMRNNFINGTAAALSNPQGTINVPHRFNPQVPFQPTDHHFIASSSSMAPNFNMSSTTTATNSDIGQKPTVQFPLWTDPPSSTPLNFPHHELMQSSSSLNITPMSNNIFGSSSVSATQWLSNLSMSPLMARGGVLKEEEEEEDQDSMNNDSLYSSTNHMSATTLLQKSAHGTDNVIHCRITGFQWD 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1420318 1423264 - Conep18aG0029800.1 Cone18ag0291 457252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0291 397 MobiDBLite consensus disorder prediction 345 366 - -
Cone18ag0291 397 FunFam protein indeterminate-domain 12-like 46 115 - -
Cone18ag0291 397 SUPERFAMILY beta-beta-alpha zinc fingers 66 164 IPR036236 -
Cone18ag0291 397 Gene3D Classic Zinc Finger 63 90 - -
Cone18ag0291 397 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 143 167 - -
Cone18ag0291 397 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Cone18ag0291 397 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 381 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone18ag0291 397 SMART c2h2final6 109 139 IPR013087 -
Cone18ag0291 397 SMART c2h2final6 144 164 IPR013087 -
Cone18ag0291 397 SMART c2h2final6 67 89 IPR013087 -
Cone18ag0291 397 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Cone18ag0291 397 Gene3D Classic Zinc Finger 101 192 - -
Cone18ag0291 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Cone18ag0291 397 Pfam Zinc finger, C2H2 type 67 89 IPR013087 -
Cone18ag0291 397 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 105 139 - -
Cone18ag0291 397 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 170 205 - -
Cone18ag0291 397 MobiDBLite consensus disorder prediction 25 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0291 Cone-Chr18:1420318 Cone20ag0834 Cone-Chr20:5986896 2.28E-99 dispersed
Cone10ag0256 Cone-Chr10:1223433 Cone18ag0291 Cone-Chr18:1420318 1.07E-102 wgd
Cone11ag1288 Cone-Chr11:9550552 Cone18ag0291 Cone-Chr18:1420318 7.01E-185 wgd
Cone13ag1273 Cone-Chr13:9597910 Cone18ag0291 Cone-Chr18:1420318 1.90E-98 wgd
Cone18ag0291 Cone-Chr18:1420318 Cone19ag1261 Cone-Chr19:8626165 4.82E-102 wgd
Cone18ag0291 Cone-Chr18:1420318 Cone3ag0282 Cone-Chr3:1468105 1.75E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45147 PF00004 AAA 2.90E-44 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0291 K25870 - vvi:100248459 364.77