Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0297 ATGGAGAGCAGTGACACAAACACTAACACAACTAATTCATCATCAAGCCCTTCTCTCGTAACAACTACTCACTCACCTTCTTCAACATCATCCGGACTAATTAGAAACATCACTCAATCCCCACCGCCTATAATCCTAAGTCCTTGCGCCGCCTGCAAGATTTTGCGGCGGCGATGTGCTGAGAATTGTGTCTTGGCTCCATATTTTCCTCCTACCGAGCCCACCAAATTCACCATCGCACACCGCGTCTTTGGTGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCTGAGTATCAAAGGACGGATGCAGTAAGCAGCATGGTGTATGAAGCGGGCGCAAGGATAAGAGATCCGGTGTACGGGTGTGCCGGGGCAATATGTCAACTCCAGAAGCAAGTGAATGAGCTCCAAGAACAGTTAGCCAAATCGCAAGCCGAGCTCGTCAACATGCAACTGCAGCAAGCGAACCTTGTTGCCCTAATTTGTAGGGAATTTTCAGGGTCTCCACAAACATCTCCTTATAATGATCATCAGCAATGTGATCTAGACAGTTTCATCAACACTAGTCCAAATAGCTATCAAACCAATCCTAGTTTCATGGAGGACAACAGCTTGGGTTCTCTGTGGGAGCCACTTTGGACATGA 648 47.38 MESSDTNTNTTNSSSSPSLVTTTHSPSSTSSGLIRNITQSPPPIILSPCAACKILRRRCAENCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQELPEYQRTDAVSSMVYEAGARIRDPVYGCAGAICQLQKQVNELQEQLAKSQAELVNMQLQQANLVALICREFSGSPQTSPYNDHQQCDLDSFINTSPNSYQTNPSFMEDNSLGSLWEPLWT 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1448190 1449345 - Conep18aG0030400.1 Cone18ag0297 457258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0297 215 MobiDBLite consensus disorder prediction 1 34 - -
Cone18ag0297 215 Pfam Lateral organ boundaries (LOB) domain 48 145 IPR004883 -
Cone18ag0297 215 Coils Coil 127 154 - -
Cone18ag0297 215 ProSiteProfiles LOB domain profile. 47 148 IPR004883 -
Cone18ag0297 215 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 178 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0297 Cone-Chr18:1448190 Cone18ag0498 Cone-Chr18:2433576 2.31E-64 dispersed
Cone11ag1078 Cone-Chr11:8438866 Cone18ag0297 Cone-Chr18:1448190 1.31E-63 wgd
Cone11ag1283 Cone-Chr11:9521027 Cone18ag0297 Cone-Chr18:1448190 3.60E-130 wgd
Cone18ag0297 Cone-Chr18:1448190 Cone5ag0326 Cone-Chr5:1378722 1.86E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45148 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0297 - - - 0.0