Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone18ag0318 | ATGAGTAGCTTGGATGCAATTAATAATCTTTCTTCCTGGCAAGGGAGCCAGCCTTGGTGTGAAGATTCCCTTTTCGTTGTTGTTGTTGCTATTCGTATTTCTCTAAGCCCTCAGTCGCTTTTCATAGTGTCTCTCAGAGGGGAAGAACAAGATCTTCCGCCGCAGGAGCTCTACGTATCTGTTTCTTCGATTTCATTTCCGGCGTTGCGAGTAGAGGAGGGAATTGTTATATTATTCTTTGGTTTCTTCGAGAATTGCTATAATTTGCTCAAAGCTACAATGGGAAAAGGAGGTGAAGATTATGGTAAAAGCGAAAGCGTGGGTACCGACTCTTCACAACGAGAAACCTTCCCTGCATGGGGGAAGGAGGTTCAAGAATGTGAGGAGAAGTACCAAGTGAGTCGTCACATGGGGTTATCCTCCGAAGAGGTTGAGAAGCAGAGAAAAATATATGGTTTGAATGAATTGGAGAAGCATGAAGGTACTTCAATTTTTAAACTGATCCTGGAGCAGTTCAATGACACATTGGTTAGAATTTTATTAGCTGCGGCAGTTGTATCTTTTGTTCTTGCATGGTACGATGGTGATGAAGGGGGTGAGCTGACAATTACAGCATTCGTTGAGCCACTTGTGATTTTCTTGATCTTAATTGTAAATGCCATTGTGGGGATCTGGCAGGAGAGCAACGCCGAGAAAGCACTAGAAGCTCTGAAAGAAATTCAGCCAGAGCAGGCAACTGTGATTCGAGATGGTAAGCGGGTTCCAAATTTCCCTGCAAAGGAGCTTGTCCCAGGTGATATTGTAGAATTGAAGGTCGGTGATAAGGTGCCTGCTGACATGAGGGTGTTGAGTTTAATCAGTTCAACTTTCCGAACTGAGCAGGGATCATTGACAGGTGAGAGTGAAGCTGTGAACAAGACTACTAAGGCTGTTCCAGAAAATGCAGATATACAGGGCAAGAAATGTATGGTCTTTGCAGGGACAACTGTGGTAAATGGGAATTGCATTTGCTTGGTTACCGCTATAGGGATGGATACTGAGTTAGGAAAGGTTCACTCCCAGATTCAAGAAGCATCAGAAAGTGAGGAAGATACCCCATTGAAGAAGAAGCTGAATGAGTTTGGAGAGCTCTTAACTGTGATAATCGGATTAATTTGTGCATTGGTCTGGCTTATTAACTTGAAGTACTTTCTTACATGGGAAATTGTTGATGGGTGGCCAAGAAATTTTAAGTTCTCGTTTGAGAAGTGTACATATTACTTTGAGATTGCTGTAGCATTGGCTGTGGCTGCTATTCCAGAAGGTCTTCCAGCAGTTATTACAACATGCTTGGCTCTTGGAACCCGGAAGATGGCTCAAAAGAATGCACTTGTCCGTAAACTTCCCAGTGTTGAAACACTAGGTTGTACGACTGTGATTTGTTCTGATAAAACAGGTACTCTGACAACCAATCAGATGGCTGTGTCAAAGCTTGTCACCATTGGTTCTAGGGCTGGTACTTTCCGATCTTTTTATGTTGAAGGGACCTCGTATGATCCATGTGATGGAAAAATACATGGCTGGCCAGCAAGCGAAATGGATGCTAATCTTCAGATGGTTGCAAAAATTGCTGCTGTCTGTAATGATGCAGGGGTTGAACGGTCTGGGAATCATTTTGTTGCTAGTGGAATGCCCACCGAGGCAGCTTTGAAGGTTCTGGTGGAGAAGATGGGACATCCTAAAGGAGTTTATTCTGGTTCCACATCCACTAAAGGGAATGTACTGCGATGTTGTCAACTATGGAATGAAACTGAGCGTCGCATTGCAACCCTTGAGTTTGATCGAGATCGTAAATCTATGGGAGTTATTGCAAACTCTAGCTCTGGGAAAAAATTGTTGCTGGTCAAGGGTGCGGTTGAGAATTTGTTGGAACGAAGTTCATTCATTCAGCTGCTTGATGCATCCATTGTGAAGTTGGATGATAATACCAGAAATCGTGTCTTAGAAATCCTTCATGAAATGTCCACAAGTGCATTACGATGTTTGGGTTTTGCATACAAGGATGAGCTTCCACAGTTTGAAACATATAATGGTGATGAAGATCATCCAGCTCACGAGCTTTTGCTTAACCCATCCAATTACTCATCCATTGAAAGTAACATGATTTTTGTTGGCTTAGTTGGTTTGAGGGATCCTCCTCGGAAAGAGGTCCGTCAAGCAATTGAAGATTGCAGAGCTGCTGGTATTCGAGTGATGGTCATCACTGGAGACAATAAGAATACTGCTGAAGCCATATGCCGCGAAATAGGCGTATTTGAATATAATGAAAATATAGATACAAAAAGCTTAACAGGTAAAGAATTCGTGGGCTTGAACATTTGTGGTCAGAAAAATCATCTAAGACAAAGTGGAGGACTCCTATTCTCGAGGGCTGAACCTAGGCATAAACAAGAAATAGTGAGATTGCTCAAGGAAGATGGTGAAGTTGTTGCAATGACTGGAGATGGAGTCAATGATGCACCTGCTTTGAAATTGGCTGACATTGGGATTGCAATGGGCATTGCTGGGACAGAGGTTGCAAAGGAAGCCTCAGACATGGTCCTAGCGGATGATAACTTCAGCACGATAGTTGCAGCTGTTGGGGAAGGCAGATCTATCTACAACAATATGAAGGCTTTTATCAGGTACATGATCTCATCAAATATCGGGGAGGTTGCTTCTATATTTCTAACTGCAGCACTGGGTATTCCTGAAGGAATGATCCCAGTCCAACTTCTCTGGGTCAATCTTGTTACTGATGGGCCCCCAGCTACAGCATTAGGATTTAACCCCCCTGACAAAGATATAATGAAGAAGCAACCCAGAAGAAGCGATGACTCATTGATTACCCTTTGGATTTTGATCCGCTATCTGGTGATTGGAATGTATGTTGGTTTTGCAACAGTCGGTGCATTTGTGATCTGGTACACACAGTCTTCATTCTTGGGCATTGACTTGACCAAAGACGGACATACGCTCGTCTCATATTCTCAACTTGCCAACTGGGATCAGTGTCACACTTGGGAAGGATTTACTGTGACACCCTTTACAGCTGGATCTGATGTGTTCAACTTCGACACAAATCCATGCGAGTACTTTAGGTCCGGGAAAATCAAGGCCTCAACTCTATCTCTTTCTGTCTTGGTTGCAATTGAGATGTTCAATTCCCTAAATGCCCTTTCCGAGGATGGTAGTCTACTGACCATGCCCCCATGGGTCAACCCGTTTCTCCTTTTAGCCATGGCTGTTTCTTTCGGCCTGCACTTCTTGATTCTCTACGTGCCATTCCTTGCTCAAGTGTTCGGTATAGTTCCTCTGAGCCTGAATGAATGGCTCTTGGTCCTGGCTGTTTCTTTACCGGTCATTCTAATCGATGAGATTCTCAAGTTCATTGGAAGGTGTACCAGTGGATTAAGAGAACCCCGGCCAAGAAAATACGTGAAGGACGACAAAGAAGAGTGA | 3480 | 43.56 | MSSLDAINNLSSWQGSQPWCEDSLFVVVVAIRISLSPQSLFIVSLRGEEQDLPPQELYVSVSSISFPALRVEEGIVILFFGFFENCYNLLKATMGKGGEDYGKSESVGTDSSQRETFPAWGKEVQECEEKYQVSRHMGLSSEEVEKQRKIYGLNELEKHEGTSIFKLILEQFNDTLVRILLAAAVVSFVLAWYDGDEGGELTITAFVEPLVIFLILIVNAIVGIWQESNAEKALEALKEIQPEQATVIRDGKRVPNFPAKELVPGDIVELKVGDKVPADMRVLSLISSTFRTEQGSLTGESEAVNKTTKAVPENADIQGKKCMVFAGTTVVNGNCICLVTAIGMDTELGKVHSQIQEASESEEDTPLKKKLNEFGELLTVIIGLICALVWLINLKYFLTWEIVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLVTIGSRAGTFRSFYVEGTSYDPCDGKIHGWPASEMDANLQMVAKIAAVCNDAGVERSGNHFVASGMPTEAALKVLVEKMGHPKGVYSGSTSTKGNVLRCCQLWNETERRIATLEFDRDRKSMGVIANSSSGKKLLLVKGAVENLLERSSFIQLLDASIVKLDDNTRNRVLEILHEMSTSALRCLGFAYKDELPQFETYNGDEDHPAHELLLNPSNYSSIESNMIFVGLVGLRDPPRKEVRQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFEYNENIDTKSLTGKEFVGLNICGQKNHLRQSGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKQPRRSDDSLITLWILIRYLVIGMYVGFATVGAFVIWYTQSSFLGIDLTKDGHTLVSYSQLANWDQCHTWEGFTVTPFTAGSDVFNFDTNPCEYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPFLLLAMAVSFGLHFLILYVPFLAQVFGIVPLSLNEWLLVLAVSLPVILIDEILKFIGRCTSGLREPRPRKYVKDDKEE | 1159 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 1574066 | 1579993 | - | Conep18aG0032500.1 | Cone18ag0318 | 457279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone18ag0318 | 1159 | Gene3D | - | 484 | 725 | IPR023299 | GO:0000166(InterPro) | |
| Cone18ag0318 | 1159 | SUPERFAMILY | HAD-like | 472 | 930 | IPR036412 | - | |
| Cone18ag0318 | 1159 | FunFam | Sodium/potassium-transporting ATPase subunit alpha | 714 | 866 | - | - | |
| Cone18ag0318 | 1159 | Gene3D | - | 170 | 1139 | - | - | |
| Cone18ag0318 | 1159 | NCBIfam | HAD-IC family P-type ATPase | 800 | 910 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone18ag0318 | 1159 | NCBIfam | HAD-IC family P-type ATPase | 413 | 496 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone18ag0318 | 1159 | NCBIfam | HAD-IC family P-type ATPase | 211 | 401 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone18ag0318 | 1159 | SUPERFAMILY | Calcium ATPase, transduction domain A | 242 | 353 | IPR008250 | - | |
| Cone18ag0318 | 1159 | FunFam | Calcium-transporting ATPase, putative | 219 | 356 | - | - | |
| Cone18ag0318 | 1159 | SFLD | p-type atpase | 455 | 878 | IPR044492 | - | |
| Cone18ag0318 | 1159 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 476 | 482 | IPR018303 | - | |
| Cone18ag0318 | 1159 | SMART | Cation_ATPase_N_a_2 | 118 | 192 | IPR004014 | - | |
| Cone18ag0318 | 1159 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 122 | 1141 | - | GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER) | |
| Cone18ag0318 | 1159 | Pfam | Cation transporter/ATPase, N-terminus | 120 | 187 | IPR004014 | - | |
| Cone18ag0318 | 1159 | Pfam | Cation transport ATPase (P-type) | 538 | 642 | - | - | |
| Cone18ag0318 | 1159 | FunFam | ECA1 (ER-TYPE CA2+-ATPASE 1) | 890 | 1144 | - | - | |
| Cone18ag0318 | 1159 | Gene3D | - | 138 | 356 | - | - | |
| Cone18ag0318 | 1159 | Pfam | haloacid dehalogenase-like hydrolase | 717 | 840 | - | - | |
| Cone18ag0318 | 1159 | SFLD | Haloacid Dehalogenase | 455 | 878 | - | - | |
| Cone18ag0318 | 1159 | Gene3D | - | 471 | 871 | IPR023214 | - | |
| Cone18ag0318 | 1159 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 331 | 506 | - | - | |
| Cone18ag0318 | 1159 | Pfam | Cation transporting ATPase, C-terminus | 912 | 1137 | IPR006068 | - | |
| Cone18ag0318 | 1159 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 120 | 1140 | IPR023298 | - | |
| Cone18ag0318 | 1159 | Pfam | E1-E2 ATPase | 240 | 454 | - | - | |
| Cone18ag0318 | 1159 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 481 | 722 | IPR023299 | GO:0000166(InterPro) | |
| Cone18ag0318 | 1159 | FunFam | calcium-transporting ATPase, endoplasmic reticulum-type | 484 | 725 | - | - | |
| Cone18ag0318 | 1159 | PRINTS | P-type cation-transporting ATPase superfamily signature | 850 | 862 | - | - | |
| Cone18ag0318 | 1159 | PRINTS | P-type cation-transporting ATPase superfamily signature | 740 | 750 | - | - | |
| Cone18ag0318 | 1159 | PRINTS | P-type cation-transporting ATPase superfamily signature | 474 | 488 | - | - | |
| Cone18ag0318 | 1159 | PRINTS | P-type cation-transporting ATPase superfamily signature | 293 | 307 | - | - | |
| Cone18ag0318 | 1159 | PRINTS | P-type cation-transporting ATPase superfamily signature | 718 | 729 | - | - | |
| Cone18ag0318 | 1159 | PRINTS | P-type cation-transporting ATPase superfamily signature | 826 | 845 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone18ag0318 | Cone-Chr18:1574066 | Cone7ag1325 | Cone-Chr7:9695965 | 9.06E-261 | dispersed | |
| Cone14ag0443 | Cone-Chr14:2069229 | Cone18ag0318 | Cone-Chr18:1574066 | 0 | transposed | |
| Cone1ag0679 | Cone-Chr1:6365823 | Cone18ag0318 | Cone-Chr18:1574066 | 0 | wgd | |
| Cone11ag1268 | Cone-Chr11:9421252 | Cone18ag0318 | Cone-Chr18:1574066 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone18ag0318 | K01537 | - | rcu:8278031 | 1762.66 |