Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0344 ATGGAGGAAGAGAAAGGTGTTCTCGTCCAGAAGCTGATCGACATGGTGAACGAGATAGCTTCGATCTCGGATTACAGATGTACGGTCAAGAAGCAGTATTGTAATCTGGCTAGGAGATTGAAGCTATTAATTCCGATGTTCGAAGAGATTAGAGATAGCAAAGAGATTGTACCTGAGGAGACGATGCAAGCTCTGATCTCGTTGAAGGATGCTCTAGAAACAGCTAAGGAGTCGCTTATATTTGGCAGCGAGGGGAGCAAGATATACTTGGTCCTAGAGAGGGAAAAAATAATGAATAAATTCCAAGAAGTAACAGCACAACTAGAACAAGCTTTGAGTGGGATTTCATATGACAAACTCGACATATCTGATGAAGTTAAGGAACAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCCGGGCTGATATGCCTGATGTTGAGTTATATGAAGATCTCTCGTCCCTTTACAATAGGAGCAATGATTTTTCTATAGATCCAAAAGTCCTAAGGAGACTGGCTGGAAAGTTACAATTAGTGGGAATATCTGACCTCACCCAAGAGTCAATAGCTTTGCATGAGATGGTTGCTGCTAGTGGTGGTGATCCAGGAGAGAGCATTGAGAAGATGTCAATGCTACTAAAGCAAATTAAGGATTTTGTTCAAACAGAAAACCCTGAAATGGATACTCCCGAGAGATCGACGAGTATTCCTTCAGGTTTCTCTGCTCAAGTATACACCGACAAGACTCAAAAGGCCACAGTTATACCAGATGATTTTCGCTGTCCTATATCCTTAGAGTTGATGAAGGATCCTGTAATAGTTTCAACCGGGCAGACCTATGAACGTTCCTGCATTGAAAAGTGGCTTGAGGCAGGGCATGGGACATGTCCTAAGACCCAGCAAACCCTCTCTAGCACCACTCTTACACCAAATTATGTCTTGCGTAGTCTCATAGCACAATGGTGCGAGGCTAACGGCATCGAACCTCCAAAACGACCCAGCAGTTCTCGACCCACTAAAACCTCTTCTTCTTGCTCACCCGCCGAATGCACACAGATCGAAATTCTTCTCTGCAAGCTAAGCTCATCCAATCCGGAAGACCAGCGTGCTGCTGCCTGTGAAATTCGGCTCCTTTCCAAACGTAATGCAGACAATAGGGTTGCCATAGCTGAGGCCGGAGCAATCCCTCTTCTTATAGGCCTCCTTTCAACCCCAGATTCACGTACTCAAGAGCATGCAGTGACAGCACTTCTTAACCTTTCCATATGCGAGGATAACAAGGGAAGCATCATTTCCTCTGGGGCCGTTCCGGGTATAGTAAATGTGCTTAAAAAGGGAAGCATGGAAGCTCGGGAAAATGCTGCTGCTACCCTTTTTAGCCTCTCAGTTGTAGATGAAAATAAAGTTACTATTGGTGCGTCAGGTGCCATCCCTCCACTTGTAACGCTTTTGAGTGAAGGTACTCAAAGGGGAAAGAAAGATGCAGCTACTGCTCTTTTCAATCTGTGCATTTACCAAGGGAATAAGGGAAAGGCCGTGAGGGCTGGTGTTGTTCCCACACTAATGCGGCTCTTGACTGAGCCGGGTGAAGGGATGGTTGATGAGGCCCTAGCTATCTTAGCCATATTGTCTAGCCATTCAGAAGGGAAGGCTGCCATTGGAGCTGCTGAAGCGGTCCCTGTCTTGGTTGAGATGATTGGGATTGGATCCCCGAGGAATAGAGAGAATGCAGCTGCTGTTATGGTGCACCTTTGTGCGGGGGATCAACAACATTTAGTGGAGGCTAAAGAGTTAGGAGTGGTGGGTCCGTTAATAGATTTGGCACAGAATGGGACGGATAGAGGGAAGAGAAAGGCTGCACAATTGCTTGAGCGTATGAACCGGTTTCTTGAGCAGCAAAAACAGGCTCAGGCTCAGGTACAAGCTGAGGCTCCATCTCAAACCCAGCTACCACCCTCCTCAACAGATGTTGCTGAAAGCTGA 1992 46.39 MEEEKGVLVQKLIDMVNEIASISDYRCTVKKQYCNLARRLKLLIPMFEEIRDSKEIVPEETMQALISLKDALETAKESLIFGSEGSKIYLVLEREKIMNKFQEVTAQLEQALSGISYDKLDISDEVKEQVELVLAQFRRAKGRADMPDVELYEDLSSLYNRSNDFSIDPKVLRRLAGKLQLVGISDLTQESIALHEMVAASGGDPGESIEKMSMLLKQIKDFVQTENPEMDTPERSTSIPSGFSAQVYTDKTQKATVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSSRPTKTSSSCSPAECTQIEILLCKLSSSNPEDQRAAACEIRLLSKRNADNRVAIAEAGAIPLLIGLLSTPDSRTQEHAVTALLNLSICEDNKGSIISSGAVPGIVNVLKKGSMEARENAAATLFSLSVVDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGEGMVDEALAILAILSSHSEGKAAIGAAEAVPVLVEMIGIGSPRNRENAAAVMVHLCAGDQQHLVEAKELGVVGPLIDLAQNGTDRGKRKAAQLLERMNRFLEQQKQAQAQVQAEAPSQTQLPPSSTDVAES 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1688095 1691669 - Conep18aG0035200.1 Cone18ag0344 457305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0344 663 PANTHER U BOX DOMAIN-CONTAINING 28 631 - -
Cone18ag0344 663 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 Gene3D - 343 658 IPR011989 -
Cone18ag0344 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cone18ag0344 663 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone18ag0344 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone18ag0344 663 SUPERFAMILY ARM repeat 356 632 IPR016024 -
Cone18ag0344 663 SUPERFAMILY RING/U-box 255 334 - -
Cone18ag0344 663 FunFam RING-type E3 ubiquitin transferase 532 650 - -
Cone18ag0344 663 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 FunFam RING-type E3 ubiquitin transferase 341 492 - -
Cone18ag0344 663 MobiDBLite consensus disorder prediction 636 663 - -
Cone18ag0344 663 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 SMART arm_5 591 631 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
Cone18ag0344 663 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Cone18ag0344 663 Pfam Mixed lineage kinase domain-like N-terminal domain 12 116 IPR054000 -
Cone18ag0344 663 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone18ag0344 663 Gene3D - 7 118 IPR036537 GO:0007166(InterPro)
Cone18ag0344 663 Coils Coil 622 642 - -
Cone18ag0344 663 CDD MLKL_NTD 8 138 - -
Cone18ag0344 663 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cone18ag0344 663 FunFam RING-type E3 ubiquitin transferase 258 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag0773 Cone-Chr13:7267140 Cone18ag0344 Cone-Chr18:1688095 2.59E-63 dispersed
Cone18ag0344 Cone-Chr18:1688095 Cone5ag0357 Cone-Chr5:1515471 8.10E-130 dispersed
Cone20ag0233 Cone-Chr20:1013458 Cone18ag0344 Cone-Chr18:1688095 4.68E-12 dispersed
Cone11ag1246 Cone-Chr11:9316383 Cone18ag0344 Cone-Chr18:1688095 2.07E-307 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0344 K27628 - cit:102612007 1020.38