Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone18ag0344 | ATGGAGGAAGAGAAAGGTGTTCTCGTCCAGAAGCTGATCGACATGGTGAACGAGATAGCTTCGATCTCGGATTACAGATGTACGGTCAAGAAGCAGTATTGTAATCTGGCTAGGAGATTGAAGCTATTAATTCCGATGTTCGAAGAGATTAGAGATAGCAAAGAGATTGTACCTGAGGAGACGATGCAAGCTCTGATCTCGTTGAAGGATGCTCTAGAAACAGCTAAGGAGTCGCTTATATTTGGCAGCGAGGGGAGCAAGATATACTTGGTCCTAGAGAGGGAAAAAATAATGAATAAATTCCAAGAAGTAACAGCACAACTAGAACAAGCTTTGAGTGGGATTTCATATGACAAACTCGACATATCTGATGAAGTTAAGGAACAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCCGGGCTGATATGCCTGATGTTGAGTTATATGAAGATCTCTCGTCCCTTTACAATAGGAGCAATGATTTTTCTATAGATCCAAAAGTCCTAAGGAGACTGGCTGGAAAGTTACAATTAGTGGGAATATCTGACCTCACCCAAGAGTCAATAGCTTTGCATGAGATGGTTGCTGCTAGTGGTGGTGATCCAGGAGAGAGCATTGAGAAGATGTCAATGCTACTAAAGCAAATTAAGGATTTTGTTCAAACAGAAAACCCTGAAATGGATACTCCCGAGAGATCGACGAGTATTCCTTCAGGTTTCTCTGCTCAAGTATACACCGACAAGACTCAAAAGGCCACAGTTATACCAGATGATTTTCGCTGTCCTATATCCTTAGAGTTGATGAAGGATCCTGTAATAGTTTCAACCGGGCAGACCTATGAACGTTCCTGCATTGAAAAGTGGCTTGAGGCAGGGCATGGGACATGTCCTAAGACCCAGCAAACCCTCTCTAGCACCACTCTTACACCAAATTATGTCTTGCGTAGTCTCATAGCACAATGGTGCGAGGCTAACGGCATCGAACCTCCAAAACGACCCAGCAGTTCTCGACCCACTAAAACCTCTTCTTCTTGCTCACCCGCCGAATGCACACAGATCGAAATTCTTCTCTGCAAGCTAAGCTCATCCAATCCGGAAGACCAGCGTGCTGCTGCCTGTGAAATTCGGCTCCTTTCCAAACGTAATGCAGACAATAGGGTTGCCATAGCTGAGGCCGGAGCAATCCCTCTTCTTATAGGCCTCCTTTCAACCCCAGATTCACGTACTCAAGAGCATGCAGTGACAGCACTTCTTAACCTTTCCATATGCGAGGATAACAAGGGAAGCATCATTTCCTCTGGGGCCGTTCCGGGTATAGTAAATGTGCTTAAAAAGGGAAGCATGGAAGCTCGGGAAAATGCTGCTGCTACCCTTTTTAGCCTCTCAGTTGTAGATGAAAATAAAGTTACTATTGGTGCGTCAGGTGCCATCCCTCCACTTGTAACGCTTTTGAGTGAAGGTACTCAAAGGGGAAAGAAAGATGCAGCTACTGCTCTTTTCAATCTGTGCATTTACCAAGGGAATAAGGGAAAGGCCGTGAGGGCTGGTGTTGTTCCCACACTAATGCGGCTCTTGACTGAGCCGGGTGAAGGGATGGTTGATGAGGCCCTAGCTATCTTAGCCATATTGTCTAGCCATTCAGAAGGGAAGGCTGCCATTGGAGCTGCTGAAGCGGTCCCTGTCTTGGTTGAGATGATTGGGATTGGATCCCCGAGGAATAGAGAGAATGCAGCTGCTGTTATGGTGCACCTTTGTGCGGGGGATCAACAACATTTAGTGGAGGCTAAAGAGTTAGGAGTGGTGGGTCCGTTAATAGATTTGGCACAGAATGGGACGGATAGAGGGAAGAGAAAGGCTGCACAATTGCTTGAGCGTATGAACCGGTTTCTTGAGCAGCAAAAACAGGCTCAGGCTCAGGTACAAGCTGAGGCTCCATCTCAAACCCAGCTACCACCCTCCTCAACAGATGTTGCTGAAAGCTGA | 1992 | 46.39 | MEEEKGVLVQKLIDMVNEIASISDYRCTVKKQYCNLARRLKLLIPMFEEIRDSKEIVPEETMQALISLKDALETAKESLIFGSEGSKIYLVLEREKIMNKFQEVTAQLEQALSGISYDKLDISDEVKEQVELVLAQFRRAKGRADMPDVELYEDLSSLYNRSNDFSIDPKVLRRLAGKLQLVGISDLTQESIALHEMVAASGGDPGESIEKMSMLLKQIKDFVQTENPEMDTPERSTSIPSGFSAQVYTDKTQKATVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSSRPTKTSSSCSPAECTQIEILLCKLSSSNPEDQRAAACEIRLLSKRNADNRVAIAEAGAIPLLIGLLSTPDSRTQEHAVTALLNLSICEDNKGSIISSGAVPGIVNVLKKGSMEARENAAATLFSLSVVDENKVTIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGEGMVDEALAILAILSSHSEGKAAIGAAEAVPVLVEMIGIGSPRNRENAAAVMVHLCAGDQQHLVEAKELGVVGPLIDLAQNGTDRGKRKAAQLLERMNRFLEQQKQAQAQVQAEAPSQTQLPPSSTDVAES | 663 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 1688095 | 1691669 | - | Conep18aG0035200.1 | Cone18ag0344 | 457305 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone18ag0344 | 663 | PANTHER | U BOX DOMAIN-CONTAINING | 28 | 631 | - | - | |
Cone18ag0344 | 663 | Pfam | Armadillo/beta-catenin-like repeat | 385 | 424 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | Pfam | Armadillo/beta-catenin-like repeat | 468 | 506 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | Gene3D | - | 343 | 658 | IPR011989 | - | |
Cone18ag0344 | 663 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 255 | 331 | IPR013083 | - | |
Cone18ag0344 | 663 | ProSiteProfiles | U-box domain profile. | 257 | 331 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone18ag0344 | 663 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 437 | 479 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 396 | 438 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | Pfam | U-box domain | 258 | 328 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone18ag0344 | 663 | SUPERFAMILY | ARM repeat | 356 | 632 | IPR016024 | - | |
Cone18ag0344 | 663 | SUPERFAMILY | RING/U-box | 255 | 334 | - | - | |
Cone18ag0344 | 663 | FunFam | RING-type E3 ubiquitin transferase | 532 | 650 | - | - | |
Cone18ag0344 | 663 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 519 | 561 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | FunFam | RING-type E3 ubiquitin transferase | 341 | 492 | - | - | |
Cone18ag0344 | 663 | MobiDBLite | consensus disorder prediction | 636 | 663 | - | - | |
Cone18ag0344 | 663 | SMART | arm_5 | 467 | 507 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | SMART | arm_5 | 385 | 425 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | SMART | arm_5 | 508 | 548 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | SMART | arm_5 | 591 | 631 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | SMART | arm_5 | 426 | 466 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | SMART | arm_5 | 549 | 589 | IPR000225 | GO:0005515(InterPro) | |
Cone18ag0344 | 663 | FunFam | RING-type E3 ubiquitin transferase | 5 | 118 | - | - | |
Cone18ag0344 | 663 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 12 | 116 | IPR054000 | - | |
Cone18ag0344 | 663 | SMART | Ubox_2 | 261 | 324 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cone18ag0344 | 663 | Gene3D | - | 7 | 118 | IPR036537 | GO:0007166(InterPro) | |
Cone18ag0344 | 663 | Coils | Coil | 622 | 642 | - | - | |
Cone18ag0344 | 663 | CDD | MLKL_NTD | 8 | 138 | - | - | |
Cone18ag0344 | 663 | CDD | RING-Ubox_PUB | 259 | 311 | IPR045210 | - | |
Cone18ag0344 | 663 | FunFam | RING-type E3 ubiquitin transferase | 258 | 331 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone13ag0773 | Cone-Chr13:7267140 | Cone18ag0344 | Cone-Chr18:1688095 | 2.59E-63 | dispersed | |
Cone18ag0344 | Cone-Chr18:1688095 | Cone5ag0357 | Cone-Chr5:1515471 | 8.10E-130 | dispersed | |
Cone20ag0233 | Cone-Chr20:1013458 | Cone18ag0344 | Cone-Chr18:1688095 | 4.68E-12 | dispersed | |
Cone11ag1246 | Cone-Chr11:9316383 | Cone18ag0344 | Cone-Chr18:1688095 | 2.07E-307 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone18ag0344 | K27628 | - | cit:102612007 | 1020.38 |