Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0358 ATGTGTAGCGGTCCAGAGCAATCAAAATCTGCATCGAATCAGACTTCGTCTGCTACAGAATCTACAGCTAACCCAAAAGATATGAATTACCTAACTGTCGAAACTGACGATTCATTATACAAGTTACTCGAACTTGCTTCTGACAATGATGCTGAAGGCTTCAAACAATTGATGGATAGTGATTTGTTTTTGATTAACAAGACTGGACTCTGGTCTGTTCGCCAGATAGGCTCGAAACAGGTTGTTCGTGAGCATAGAACTCCTTTAATGGTTGCTGCCACCTATGGTAGTATTGATGTTGTTAAAGTTATACTGGGTCAATCAGACGTTGATGTAAATCTCTCATCTGGCCTGGATAAGAGCACTGCCCTTCATTGTGCTGCGTCGAGTGGATCTGTTAATGCTGTTGAGATTGTTAATCTCCTGTTATCATTTGGGGCAGATTCACGTCTGATGGATGCTAATGGCAATCACCCAGTTGATATTATTGTTGTACATCCAAAGTTGCCGAACATGAAGGTTAGACTTGAAGATCTTCTTGGCGACAATGCATCCCCTGGATCCCTTGATATGCCTAATTTACGGTTATCCATTGCTACATCTAGTTCTGAGTCGACACCTCTCTCAACATCACCAGATAATGGGTTCTCATCTCCTTCAGGCTCAATATCTTCTCCTATGGCCTTAAAATTTTCTGACGGACCTGTCATTTCAACATTGGAGAAGAAGGAATATCCAATTGATCCTTCTCTGCCTGACATTAAGAACAGTATTTATTCAACTGATGAATTCCGCATGTTTTCATTCAAGGTGCGGCCCTGTTCACGGGCTTATTCCCATGATTGGACTGAGTGCCCTTTTGTCCACCCAGGAGAGAATGCTCGCAGAAGAGATCCAAGGAAGTTTCATTATAGCTGTGTTCCTTGCCCCGATTTCCGAAAGGGTGCTTGCAGGCGTGGGGATATGTGTGAATATGCACATGGAGTTTTTGAATGCTGGCTGCACCCAGCTCAGTACAGAACCCGTCTTTGCAAGGATGGCACAAGCTGTGATAGGCGGGTCTGTTTCTTTGCCCACACAACTGAGGAGCTTCGTCCCTTGTATGTCTCTACTGGATCTGCTGCCCCTTCACCCAGGTCAACTGGGTCCGCCCCAAATGTCATGGACATGGCTACGGCAATGAGTATGTTACCTGGCTCCCCATCTTCAGTATCTGCAATATCTCCTTCCCCTTTTAGCCAGCCCATGTCTCCCTCCTCCAATAACATTCCTCACTCACTGGTGGCCTGGCCTCTGCCAAATGTACCCACCCTTCATCTCCCTGGAAGCAACCTCCAATCCAGTCGTCTCAGGTCATCTCTTAGTGCTCGGGATATCCCACCAGAGGATCTGAAAATGTTGCAGGATTTTAATGCCCAGCAACGTATTTTAAATGACGTGACTTGTTTTTCTCAGTCTCATACTAATCCTGTTTCTTTAAGCCGGTCGGGAACTCTAACTTCACCCTACCTCGAAGAGCTATTTTCTGCTGAGATCTCTTCATCACCCCGTTTTTCTGACCCCTCCTTTGCTTCTGTTTTCTCCCCTACCCATAAATCTGCTGTTCTGAATCAATTTCAACAGCAGCAAAGCATGTTATCACCCATTATCACAAACAATTTGTCCCCCAGGACTGTTGATCATCCTCTACTGCAGCCTCCCTTTGGAGTCTCATCTCCTGGAAGGATGTCGCCTAGAAGCATTGAGCCTATATCGCCCATGGGATCTAGGCTAGCGTCATTGGCTCAGCGCGAGAAGCAACATCATCAGCAGCAATTTAGAAGTTTAAGCTCTAGGGAACTTGGATGTAACATCCCCTCTTTAATAGTTGGATCTCCAGTGAATTCTTGGGCAAAATGGGGATCCCCTAATGGAAAAGCAGATTGGTCGGTGAATGGGGATGAACTTGGTCAACTTAAGAGATCTTCTTCATTTGAGCTTGGGAATAATGGGGAGGAGCCGGACTTGTCGTGGGTCCAATCACTTGTCAAGGAATCTCCACCTGAGATGGTTAAAGGGACGTTGGCAGTTCCGGTTAGAGGTACTTCCGCATCCGGTGAGGGTTTGACTACTACCAATCCCCAAGTTGAATCCAATGACCACGCTGTTTTAGGAACTTGGCTCGAGCAGATGCAGCTTGATCAGCTTGTAGTCTAG 2196 45.99 MCSGPEQSKSASNQTSSATESTANPKDMNYLTVETDDSLYKLLELASDNDAEGFKQLMDSDLFLINKTGLWSVRQIGSKQVVREHRTPLMVAATYGSIDVVKVILGQSDVDVNLSSGLDKSTALHCAASSGSVNAVEIVNLLLSFGADSRLMDANGNHPVDIIVVHPKLPNMKVRLEDLLGDNASPGSLDMPNLRLSIATSSSESTPLSTSPDNGFSSPSGSISSPMALKFSDGPVISTLEKKEYPIDPSLPDIKNSIYSTDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTTEELRPLYVSTGSAAPSPRSTGSAPNVMDMATAMSMLPGSPSSVSAISPSPFSQPMSPSSNNIPHSLVAWPLPNVPTLHLPGSNLQSSRLRSSLSARDIPPEDLKMLQDFNAQQRILNDVTCFSQSHTNPVSLSRSGTLTSPYLEELFSAEISSSPRFSDPSFASVFSPTHKSAVLNQFQQQQSMLSPIITNNLSPRTVDHPLLQPPFGVSSPGRMSPRSIEPISPMGSRLASLAQREKQHHQQQFRSLSSRELGCNIPSLIVGSPVNSWAKWGSPNGKADWSVNGDELGQLKRSSSFELGNNGEEPDLSWVQSLVKESPPEMVKGTLAVPVRGTSASGEGLTTTNPQVESNDHAVLGTWLEQMQLDQLVV 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1739191 1743280 - Conep18aG0036700.1 Cone18ag0358 457319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0358 731 SUPERFAMILY Ankyrin repeat 83 190 IPR036770 -
Cone18ag0358 731 Gene3D - 2 215 IPR036770 -
Cone18ag0358 731 MobiDBLite consensus disorder prediction 200 221 - -
Cone18ag0358 731 Pfam Ankyrin repeats (3 copies) 51 150 IPR002110 GO:0005515(InterPro)
Cone18ag0358 731 PANTHER UNKEMPT FAMILY MEMBER 74 680 IPR045234 -
Cone18ag0358 731 SMART ANK_2a 119 151 IPR002110 GO:0005515(InterPro)
Cone18ag0358 731 SMART ANK_2a 84 114 IPR002110 GO:0005515(InterPro)
Cone18ag0358 731 SMART c3hfinal6 303 329 IPR000571 GO:0046872(InterPro)
Cone18ag0358 731 SMART c3hfinal6 338 361 IPR000571 GO:0046872(InterPro)
Cone18ag0358 731 MobiDBLite consensus disorder prediction 1 29 - -
Cone18ag0358 731 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 328 IPR000571 GO:0046872(InterPro)
Cone18ag0358 731 Gene3D - 304 366 - -
Cone18ag0358 731 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515(InterPro)
Cone18ag0358 731 FunFam Zinc finger CCCH domain-containing protein 66 261 329 - -
Cone18ag0358 731 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Cone18ag0358 731 ProSiteProfiles Zinc finger C3H1-type profile. 308 330 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0050 Cone-Chr10:310015 Cone18ag0358 Cone-Chr18:1739191 4.51E-271 dispersed
Cone13ag0563 Cone-Chr13:5816285 Cone18ag0358 Cone-Chr18:1739191 2.26e-313 dispersed
Cone18ag0358 Cone-Chr18:1739191 Cone19ag0515 Cone-Chr19:4239380 0.00E+00 dispersed
Cone1ag1210 Cone-Chr1:55944624 Cone18ag0358 Cone-Chr18:1739191 1.79E-124 wgd
Cone11ag1236 Cone-Chr11:9259938 Cone18ag0358 Cone-Chr18:1739191 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45153 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0358 - - - 0.0