Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0407 ATGGCGGCTAGTGAGAGCACGGTTCTGCAATTCATGCAGTCGTCGACGAGTTTATCGGCGAAGGTTCACCCGCTTGTCATCTTCAACATCTGCGATTGCTATGTGAGACGTCCAGATCAGGCCGAGCGGGTCATCGGTACTCTTCTCGGCTCTGTTTTACCCGACGGAACCGTTGATATTCGAAACTCTTATGCTGTTCCTCACAACGAGTTCTCCGATCAGGTTGCTATGGACATTGATTATCATCACAATATGTTGATCTCTCACCAAAAGGTGAATCCAAAGGAAGTCATTGTTGGATGGTACTCGACTGGATTGGGAGTTACAGGAGGGAGTGCACTAATACATGAATTTTATTCTCGAGAAGTCACAAACCCTGTTCACTTGACTGTTGATACCGGTTTCAGGAATGGAGAAGGCACTATAAAAGCTTACGTCTCTGTCAACTTGTCTCTAGGAAACAGACAGCTTGCTACCCAGTTTCAAGAAATTCCTCTAGATCTTCGAATGGTTGAGGCTGAACGGGTTGGATTCGATGTTCTAAAGTCACCAACTGTTGATAAGCTACCCAATGATTTGGAAGGAATGGAATCCTCGATGGAACGGCTACTAGCTCTAATTGATGATGTTTATAAATATGTTGACGGTGTTGTGGAAGGGCAAGTTGAACCTGACAACAACATTGGACGATTCATAGCCGATAGTGTAGCAGCTCTTCCCAAACTTCCTCCATCTGCTTTTGATAAACTTGTGAATGATAGCATTCAGGACCACCTGCTGTTGGTATATCTGTCGAGCATCACTAGGACTCAACTCAGCTTAGCCGAGAAATTGAACACGGCTGCTCAGATCCTCTAA 858 45.1 MAASESTVLQFMQSSTSLSAKVHPLVIFNICDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYAVPHNEFSDQVAMDIDYHHNMLISHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVTNPVHLTVDTGFRNGEGTIKAYVSVNLSLGNRQLATQFQEIPLDLRMVEAERVGFDVLKSPTVDKLPNDLEGMESSMERLLALIDDVYKYVDGVVEGQVEPDNNIGRFIADSVAALPKLPPSAFDKLVNDSIQDHLLLVYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2004061 2006038 + Conep18aG0041600.1 Cone18ag0407 457368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0407 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Cone18ag0407 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Cone18ag0407 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Cone18ag0407 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 14 281 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
Cone18ag0407 285 Pfam Maintenance of mitochondrial structure and function 172 279 IPR024969 -
Cone18ag0407 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 17 123 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cone18ag0407 285 SMART pad1_6 19 150 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cone18ag0407 285 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
Cone18ag0407 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0375 Cone-Chr10:1768874 Cone18ag0407 Cone-Chr18:2004061 6.31E-30 wgd
Cone11ag1183 Cone-Chr11:8974930 Cone18ag0407 Cone-Chr18:2004061 1.52E-200 wgd
Cone18ag0407 Cone-Chr18:2004061 Cone3ag0410 Cone-Chr3:2016783 5.48E-32 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0407 K03249 - csv:101205957 506.523