Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0439 ATGGCTACAAAGGCACAGCTCCTAACTCTATTCTGTCTCTTCCTCTCCCTCTTGAACCACCCAGTAAAATCCCAACTTACTAACTCCGATTCCGAGTTCTTCTTTAACGGCTTCACTAACCGCAGAGACAACATCACCCTAAACGGCGCTGCAGAGATCGAACCGAGCGGCCTTCTCCGCCTCACAAACACGAGCTATCAGATCCTTGGCCACGCCTTCTACTCTTCTCCGATTCAATTCAAGAACTCCACCTCTGCTAAACCTCTTTCCTTCTCTACCGCCTTCGCCTTTGCCATAATCCCTCAGTACGCTAACTCCGGTGGCCATGGCTTCGCCTTCACCATCTCTCCGTCCAAAACCCTCGCCGGAGCTCTCCCCAGCCAGTACCTCGGACTTCTCAACGCCGGTGACGTCGGAAACTTCTCCAACCATTTGTTCGCCGTTGAATTCGATACCGTTCAAGATTTTGAATTCAACGACATTGATAACAACCATGTCGGAATCGACATCAACAGTTTGGACTCAAAAAAATCCGTGTCGGTTTCCAACAAGAATTCTTCCTACCCGAACTTCAATTTGAAGAGCGGTGACATTTTTCAAGCCTGGATCGATTACGATTCGGAAAATAATCTAATCGAGGTAAGGCTCAACAGGTCTTCGATAAAACCCATAAAACCAATTCTGTCTTGGAACGTGGATCTTTCGAATGTTCTAGAAGATTCCATGTACGTCGGATTTTCCAGCTCAACTGGGTCCCTCTCGAGCTCGCATTACATTCTGGGTTGGAGCTTCAGAATCGATAATGGAGAAGCAAGGTCTTTCTATCTAGAAGCTCTACCTTCACTATCTCGGCCGAAGAAAAAGAATCGGACGGCTCTGATAGTTGGTGTTTCGATCGGGACCAGTTTAGGGGCTTGTTTGGTAATAGGGATAGCTTATTACGTGTTTCGGAGAGTAAAAAACGCGGATGTGATCGAGCCATGGGAAGTTGGAATTGGCCCGCATAGGTTTCCTTACAAGGAGTTGAAGAAGGCAACAAGAGGGTTCGGAGAGAAAGAGGTGATCGGATTTGGCGGATTTGGTCGGGTTTATAAAGGGACATTGCCAGTTTTGAAAACCGAAATCGCGGTCAAGCGGATTTATAGTGAATCTAAACAGGGAATTCAAGAATTCGTGTCGGAAATTGCTAGTATCGGGCGGCTTCGTCATAGAAATTTGGTTCAATTGCTTGGTTGGTGTAGAAGAAAAGATGATCTTTTACTTGTTTATGACTTTATGCCTAATGGGAGTTTAGATAAGTGTCTTTTTAATCCGTCGAATGGGTTGGTTTTGACTTGGGAACAACGGTTTAAGATCATTAAAGGTGTAGCTTCCGGGTTGTTATATTTGCACGAGGAATGGGAGCAAACCGTGATTCATAGAGATATTAAAGCGGGAAATGTTTTGCTTGATAGTGATCTAAATGCAAAGCTTGGTGATTTCGGATTGGCTAAGTTGCATGAGCACGGGTCAAACCCAAGTACGACCAGGGTTGTAGGCACGTTGGGGTATTTGGCACCGGAGCTGACTCGGACCGGTAAACCCACGACGAGCTCGGATGTGTTTGCGTTCGGGGCTTTGTTGCTTGAAGTGGTGTGTGGGAGAAGGCCCATGGATCCCAAGGCAATGCCTGAGGAGCTTATGTTGGTTGATTGGGTTTGGGAAAGGTGGATGGACAGGGCAATCCTTGATGTTGTGGATCCAAAGTTGGTAGGTGAGTTTGATGAAGTGGAGGTTATTGTGGTCTTGAAGTTGGGCCTTATGTGTTCTAACTATTTTCCTGAATCCCGGCCCAGTATTAGGCAGTTGGTGCGGTTCTTAGAGGGGGAGATCGCACCACCGGATGTGGTTGAGAATCCAAATTTCCATGATATGAAAAAGGGAGGTAATGGTGGTAATGTTGTTGCATTTGAGGAGTGTATCCATTTGAAACCCAACTTCTTATTTTGA 1989 46.2 MATKAQLLTLFCLFLSLLNHPVKSQLTNSDSEFFFNGFTNRRDNITLNGAAEIEPSGLLRLTNTSYQILGHAFYSSPIQFKNSTSAKPLSFSTAFAFAIIPQYANSGGHGFAFTISPSKTLAGALPSQYLGLLNAGDVGNFSNHLFAVEFDTVQDFEFNDIDNNHVGIDINSLDSKKSVSVSNKNSSYPNFNLKSGDIFQAWIDYDSENNLIEVRLNRSSIKPIKPILSWNVDLSNVLEDSMYVGFSSSTGSLSSSHYILGWSFRIDNGEARSFYLEALPSLSRPKKKNRTALIVGVSIGTSLGACLVIGIAYYVFRRVKNADVIEPWEVGIGPHRFPYKELKKATRGFGEKEVIGFGGFGRVYKGTLPVLKTEIAVKRIYSESKQGIQEFVSEIASIGRLRHRNLVQLLGWCRRKDDLLLVYDFMPNGSLDKCLFNPSNGLVLTWEQRFKIIKGVASGLLYLHEEWEQTVIHRDIKAGNVLLDSDLNAKLGDFGLAKLHEHGSNPSTTRVVGTLGYLAPELTRTGKPTTSSDVFAFGALLLEVVCGRRPMDPKAMPEELMLVDWVWERWMDRAILDVVDPKLVGEFDEVEVIVVLKLGLMCSNYFPESRPSIRQLVRFLEGEIAPPDVVENPNFHDMKKGGNGGNVVAFEECIHLKPNFLF 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2140102 2142512 + Conep18aG0044800.1 Cone18ag0439 457400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0439 662 Gene3D Phosphorylase Kinase; domain 1 334 425 - -
Cone18ag0439 662 SUPERFAMILY Protein kinase-like (PK-like) 331 636 IPR011009 -
Cone18ag0439 662 Pfam Protein kinase domain 351 553 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0439 662 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524(InterPro)
Cone18ag0439 662 PANTHER - 35 626 IPR050528 GO:0005886(PANTHER)
Cone18ag0439 662 Gene3D Transferase(Phosphotransferase) domain 1 426 635 - -
Cone18ag0439 662 Gene3D - 29 268 - -
Cone18ag0439 662 Pfam Legume lectin domain 31 272 IPR001220 GO:0030246(InterPro)
Cone18ag0439 662 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 268 IPR013320 -
Cone18ag0439 662 SMART serkin_6 349 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0439 662 CDD STKc_IRAK 355 622 - -
Cone18ag0439 662 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone18ag0439 662 CDD lectin_legume_LecRK_Arcelin_ConA 32 267 IPR001220 GO:0030246(InterPro)
Cone18ag0439 662 ProSiteProfiles Protein kinase domain profile. 349 635 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone18ag0439 662 FunFam L-type lectin-domain containing receptor kinase S.4 29 272 - -
Cone18ag0439 662 FunFam Lectin-domain containing receptor kinase A4.3 334 425 - -
Cone18ag0439 662 FunFam L-type lectin-domain containing receptor kinase S.4 426 633 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0439 Cone-Chr18:2140102 Cone19ag1420 Cone-Chr19:9274178 1.05E-189 dispersed
Cone10ag0326 Cone-Chr10:1536026 Cone18ag0439 Cone-Chr18:2140102 6.77E-226 wgd
Cone11ag1143 Cone-Chr11:8802768 Cone18ag0439 Cone-Chr18:2140102 0 wgd
Cone18ag0439 Cone-Chr18:2140102 Cone19ag1343 Cone-Chr19:8943281 9.62E-272 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82315 PF04855 SNF5 2.10E-14 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0439 - - - 0.0