Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0440 ATGAGCTTCGTTTTCCGAGGAACGAGAGCACCAGACATAGAGAGTGATCTCTCTGGATTTATACCTGAGCGGCGAGCAATGCGGGTTCATTCAGCCCGTCCAGTTAATTCTAACTCACTTGCCTTTCTTCTCACAGTTCTGTTGTTATTCATGTTATTAAACTCACACCAAATGTCACCTAACTTTCTGCTCTGGCTTGTGGTTGGTGTTTTCGTGATGGCTACAACATTAAGGATGTATGCAACTTGTCAGCAACTCCAGGCCCAAGCCCAGGCTCATGCAATGGCAGCCAGTGTTCTTCTCGGCCATACTGAGTTGCGGTTGCAAATGCCACCATCCATAGCGTTCGCAACCAGAGGGCGTTTACAGGGCCTTAGACTTCAGCTTGCATTACTTGACCGGGAATTTGATGACCTAGATTATGAAACTTTGAGAGCATTGGATTCGGACAATGTTCCAACAGTTCCTTCAATGAGTGATGAAGAGATAAATGCCCTTCCTGCTCATAAGTATAAGGTCTCTGGCTCCCAAAGTGGTTCTAACCCTTCCTCGTCGATTCAACAGGGCTCCTCTTCAACTACTGAGAAGAAACAAGATCTAGCCAATTCAATTGGGAGTACAAAATCCTCAGACGATGAACTGACTTGCAGTGTTTGCTTGGAGCAAGTTAGTGTTGGAGAACTTCTACGAAGCTTGCCATGCCTACACCAGTTTCATGCAAATTGCATTGATCCATGGCTCCGGCAACAAGGAACATGTCCGGTTTGTAAGTACAGAGCAGGGTCCGAATGGCACGAAAATGAAGAAGGCGAAACCGATGTTTCTTACATGGTTTGA 837 46.0 MSFVFRGTRAPDIESDLSGFIPERRAMRVHSARPVNSNSLAFLLTVLLLFMLLNSHQMSPNFLLWLVVGVFVMATTLRMYATCQQLQAQAQAHAMAASVLLGHTELRLQMPPSIAFATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTVPSMSDEEINALPAHKYKVSGSQSGSNPSSSIQQGSSSTTEKKQDLANSIGSTKSSDDELTCSVCLEQVSVGELLRSLPCLHQFHANCIDPWLRQQGTCPVCKYRAGSEWHENEEGETDVSYMV 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2144666 2148347 + Conep18aG0044900.1 Cone18ag0440 457401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0440 278 SUPERFAMILY RING/U-box 210 260 - -
Cone18ag0440 278 CDD RING-H2_PA-TM-RING 215 257 - -
Cone18ag0440 278 ProSiteProfiles Zinc finger RING-type profile. 216 257 IPR001841 -
Cone18ag0440 278 Pfam Ring finger domain 215 257 IPR001841 -
Cone18ag0440 278 SMART ring_2 216 256 IPR001841 -
Cone18ag0440 278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 262 IPR013083 -
Cone18ag0440 278 PANTHER TARGET OF ERK KINASE MPK-1 3 260 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cone18ag0440 278 MobiDBLite consensus disorder prediction 172 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0212 Cone-Chr14:989128 Cone18ag0440 Cone-Chr18:2144666 2.45E-16 dispersed
Cone17ag0744 Cone-Chr17:5539982 Cone18ag0440 Cone-Chr18:2144666 6.45E-11 dispersed
Cone18ag0440 Cone-Chr18:2144666 Cone9ag1634 Cone-Chr9:11624420 4.32E-13 dispersed
Cone11ag1140 Cone-Chr11:8790252 Cone18ag0440 Cone-Chr18:2144666 2.01E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0440 K16283 - csv:101216306 412.92