Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone18ag0444 ATGGCCACGAATACGATGTCTCTGCTCTGCATTATCTCTTTGACTTCATTCTTAACACTTGCTAACGCCAGAATTCCCGGCGTTTACTCCGCCGGACAGTGGGAAACCGCCCACGCCACCTTCTACGGTGGCAGCGATGCCTCTGGAACAATGGGCGGTGCTTGTGGGTATGGAAACCTGTACAGCCAAGGCTACGGCGTAAACACGGCGGCGCTGAGCACTGTTCTCTTCAACAATGGTTTGAGCTGCGGGGCATGTTTCGAAATCAAGTGCGCTAGTGACCCAAAATGGTGTCATTCCGGCAGCCCTTCCATCTTGGTCACTGCCACCAACTTTTGCCCACCTAACTACGCCCTTCCCAGCGACAATGGCGGATGGTGCAACCCGCCCCGGCCCCATTTCGACCTCGCCATGCCCATCTTCCTCAAAATCGCCGAGTACCGGGCCGGAATTGTCCCCGTCTCTTACCGCCGGGTGCCATGCAGAAAGCAGGGAGGGATCAGGTTTACGATAAACGGGTTCAAGTACTTCAACCTGGTTTTAATCACCAACGTGGCGGGTGCAGGGGATATAGTGAAGGCCAGTGTAAAGGGGTCAAAGACTGGTTGGATGAGTATGAGCCGGAACTGGGGCCAAAACTGGCAGTCAAACGCCGTTTTGGTTGGTCAGTCGCTCTCTTTCAGAGTCACAGGCAGTGACCGCCGCACCTCCACTTCCTGGAACATCGTTCCTTCCAATTGGCAATTTGGTCAAACTTTTTCTGGGAAAAATTTCAGGGTCTAA 783 53.9 MATNTMSLLCIISLTSFLTLANARIPGVYSAGQWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTVLFNNGLSCGACFEIKCASDPKWCHSGSPSILVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPIFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFKYFNLVLITNVAGAGDIVKASVKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPSNWQFGQTFSGKNFRV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2169890 2171219 + Conep18aG0045400.1 Cone18ag0444 457405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone18ag0444 260 Pfam Lytic transglycolase 69 156 IPR009009 -
Cone18ag0444 260 Gene3D - 166 258 IPR036749 -
Cone18ag0444 260 PANTHER EXPANSIN-A15 15 258 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Cone18ag0444 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Cone18ag0444 260 FunFam Expansin 23 162 - -
Cone18ag0444 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Cone18ag0444 260 SUPERFAMILY PHL pollen allergen 163 254 IPR036749 -
Cone18ag0444 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664(InterPro)
Cone18ag0444 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
Cone18ag0444 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
Cone18ag0444 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
Cone18ag0444 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
Cone18ag0444 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
Cone18ag0444 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
Cone18ag0444 260 CDD DPBB_EXPA_N 33 161 - -
Cone18ag0444 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Cone18ag0444 260 SMART dpbb_1 69 156 IPR007112 -
Cone18ag0444 260 Gene3D - 20 162 IPR036908 -
Cone18ag0444 260 FunFam Expansin 166 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0334 Cone-Chr12:1836858 Cone18ag0444 Cone-Chr18:2169890 2.41E-91 dispersed
Cone18ag0444 Cone-Chr18:2169890 Cone4ag1056 Cone-Chr4:9198068 3.62E-168 dispersed
Cone1ag1273 Cone-Chr1:56207894 Cone18ag0444 Cone-Chr18:2169890 1.38E-160 wgd
Cone1ag0635 Cone-Chr1:6129085 Cone18ag0444 Cone-Chr18:2169890 1.86E-170 wgd
Cone10ag0314 Cone-Chr10:1493173 Cone18ag0444 Cone-Chr18:2169890 5.02E-161 wgd
Cone11ag1137 Cone-Chr11:8754627 Cone18ag0444 Cone-Chr18:2169890 2.73E-190 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone3ag0231 Cone-Chr3:1231774 1.77E-106 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone3ag0344 Cone-Chr3:1750135 1.35E-149 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone5ag0260 Cone-Chr5:1106128 6.34E-157 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone5ag1140 Cone-Chr5:5119294 5.36E-170 wgd
Cone18ag0444 Cone-Chr18:2169890 Cone7ag1075 Cone-Chr7:8181630 7.56E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone18ag0444 - - - 0.0