Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone18ag0450 | ATGGGGAAGAATGAGTTTCTTACACCCAAAGCGATCGCAAACAGAATAAAGGCAAAAGGTCTTCAAAAACTTAGATGGTACTGCCAGATGTGCCAGAAACAGTGCAGGGATGAGAACGGATTCAAATGCCACTGTATGAGTGAAAGTCATCAACGCCAAATGCAAGTCTTTGGCCAAAACCCTAATCGCATCGTCGATGGTTACTCAGAAGAATTTGAAAGGGCTTTCATGGAGAATATGAAACGCAGCCACCGTTTCAGCCGAATAGCGGCCACAGTCGTTTACAATGAATACATTAACGATCGGCATCACATCCATATGAATTCAACACAGTGGGCTACTCTTACCGAGTTTGTGAAGCATTTGGGTCGAACAGGTCAGTGTAAAGTTGAAGAGACCCCAAAGGGTTGGTTTATTACTTATATAGATAGAGATTCAGAGACCCTTTTCAAAGAAAATTTGAAAAACAAGAGAATTCGAGCTGATTTAGCGGATGAAGAGAAGCAAGAAAGGGAGATAAAGAAGCAGATTGAGAGGGCCGAGCAGTTGATGCCGTTGGGTTCTGAGTCCACTCAGCCTTTGGATACTGAACAAGCTAAGGAGTTGAATTTGGAGAGGGGAGTTAAGATTGGTTTTGCACTTGGCTCATCTTCTAAAGTGAAGGAGAAGACGGAGAATTCAAAACTGGTTTTTGATGAGCCACAGAATGATGCAAATGAGAGAGGTAAAGTTGCAGGGAAGTCAAGCTCAAATGGGACGGATAATGGCCGGTCAGCTTTGGAGGAATTGATGAGAGAGGAAGAGAAGAAGAAGGAGAAGTTTAATAGGAAGGATTACTGGTTATGTGAGGGTATAATTGTGAAGGTAATGAGCAAGGCGTTGGCTGAGAAGGGGTACTACAAGCAAAAGGGAGTTGTGAGGAAAGTTATAGATAAATATGTAGGGGAGATAGAAATGCTCGATAGCAAGCATGTGCTTAGAGTCGACCAAGAAGAGCTCGAGACTGTGATCCCACAAATTGGGAGCCTTGTGAGGATTGTGAATGGGGCCTATCGTGGGTCGAATGCACGGCTTTTGGCTGTGGATATAGATAAGTTTTGTGCTAAGGTTCAGATTGAGAAGGGCGTTTATGATGGTAGGGTTATCAAGGCAGTTGAGTACGAGGATATCTGTAAAGTTGTCTAG | 1185 | 43.46 | MGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMQVFGQNPNRIVDGYSEEFERAFMENMKRSHRFSRIAATVVYNEYINDRHHIHMNSTQWATLTEFVKHLGRTGQCKVEETPKGWFITYIDRDSETLFKENLKNKRIRADLADEEKQEREIKKQIERAEQLMPLGSESTQPLDTEQAKELNLERGVKIGFALGSSSKVKEKTENSKLVFDEPQNDANERGKVAGKSSSNGTDNGRSALEELMREEEKKKEKFNRKDYWLCEGIIVKVMSKALAEKGYYKQKGVVRKVIDKYVGEIEMLDSKHVLRVDQEELETVIPQIGSLVRIVNGAYRGSNARLLAVDIDKFCAKVQIEKGVYDGRVIKAVEYEDICKVV | 394 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 2192395 | 2194432 | - | Conep18aG0046200.1 | Cone18ag0450 | 457411 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone18ag0450 | 394 | MobiDBLite | consensus disorder prediction | 224 | 240 | - | - | |
| Cone18ag0450 | 394 | MobiDBLite | consensus disorder prediction | 242 | 257 | - | - | |
| Cone18ag0450 | 394 | Pfam | Domain of Kin17 curved DNA-binding protein | 52 | 177 | IPR019447 | - | |
| Cone18ag0450 | 394 | FunFam | DNA/RNA-binding protein kin17-like | 284 | 337 | - | - | |
| Cone18ag0450 | 394 | Gene3D | - | 60 | 159 | IPR038254 | - | |
| Cone18ag0450 | 394 | Gene3D | - | 284 | 337 | - | - | |
| Cone18ag0450 | 394 | CDD | KOW_KIN17 | 340 | 393 | IPR041995 | - | |
| Cone18ag0450 | 394 | MobiDBLite | consensus disorder prediction | 224 | 257 | - | - | |
| Cone18ag0450 | 394 | Coils | Coil | 257 | 277 | - | - | |
| Cone18ag0450 | 394 | PANTHER | KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG | 1 | 393 | IPR037321 | GO:0003690(PANTHER)|GO:0005634(PANTHER)|GO:0006260(PANTHER)|GO:0006974(PANTHER) | |
| Cone18ag0450 | 394 | SMART | Kin17_mid_2 | 52 | 178 | IPR019447 | - | |
| Cone18ag0450 | 394 | Coils | Coil | 156 | 183 | - | - | |
| Cone18ag0450 | 394 | Pfam | KN17 SH3-like C-terminal domain | 276 | 329 | IPR041330 | - | |
| Cone18ag0450 | 394 | FunFam | DNA/RNA-binding protein KIN17, putative | 338 | 394 | - | - | |
| Cone18ag0450 | 394 | FunFam | DNA/RNA-binding protein KIN17, putative | 61 | 160 | - | - | |
| Cone18ag0450 | 394 | Gene3D | - | 338 | 394 | IPR014722 | - | |
| Cone18ag0450 | 394 | SUPERFAMILY | beta-beta-alpha zinc fingers | 26 | 62 | IPR036236 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone11ag1130 | Cone-Chr11:8728864 | Cone18ag0450 | Cone-Chr18:2192395 | 1.81E-256 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone18ag0450 | K13102 | - | csv:101216499 | 645.966 |